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Assessment of ciliates in the sheep rumen by DGGE
Title Assessment of ciliates in the sheep rumen by DGGE Author Regensbogenová Martina SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV Co-authors Pristaš Peter 1962 SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV SCOPUS RID ORCID Javorský Peter 1950-2021 SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV RID ORCID Moon-van der Staay SY Moon-van der Staay GWM Hackstein JHP Newbold CJ McEwan NR Source document Letters in applied microbiology. Vol. 39, no.2 (2004), p. 144-147 Language eng - English Country GB - Great Britian Document kind rozpis článkov z periodík (rbx) Citations LODGE-IVEY, S.L. - BROWNE-SILVA, J. - HORVATH, M.B. Technical note: Bacterial diversity and fermentation end products in rumen fluid samples collected via oral lavage or rumen cannula. In JOURNAL OF ANIMAL SCIENCE. ISSN 0021-8812, JUL 2009, vol. 87, no. 7, p. 2333-2337. SUNDSET, M. - EDWARDS, J. - CHENG, Y. - SENOSIAIN, R. - FRAILE, M. - NORTHWOOD, K. - PRAESTENG, K.E. - GLAD, T. - MATHIESEN, S. - WRIGHT, A.D. Molecular Diversity of the Rumen Microbiome of Norwegian Reindeer on Natural Summer Pasture. In MICROBIAL ECOLOGY. ISSN 0095-3628, FEB 2009, vol. 57, no. 2, p. 335-348. GUO, Tong-jun - WANG, Jia-qi - WANG, Jian-ping - HUO, Xiao-kai - BU, Deng-pan - WEI, Hong-yang - ZHOU, Ling-yun - LIU, Kai-lang. Research progress on Quantitative Method for rumen microorganism. In CHINA ANIMAL HUSBANDRY AND VETERINARY MEDICINE. ISSN 1671-7236, 2009, vol. 36, no. 4, p. 19-24. DE LA FUENTE, G. - BELANCHE, A. - ABECIA, L. - DEHORITY, B.A. - FONDEVILA, M. Rumen protozoal diversity in the Spanish ibex (Capra pyrenaica hispanica) as compared with domestic goats (Capra hircus). In EUROPEAN JOURNAL OF PROTISTOLOGY, ISSN 0932-4739, 2009, vol. 45, no. 2, p. 112-120 MEDINA-PONS, F.J. - TERRADOS, J. - ROSSELLO-MORA, R. Application of temperature gradient gel electrophoresis technique to monitor changes in the structure of the eukaryotic leaf-epiphytic community of Posidonia oceanica. In MARINE BIOLOGY. ISSN 0025-3162, SEP 2008, vol. 155, no. 4, p. 451-460. CHAUCHEYRAS-DURAND, F. - WALKER, N.D. - BACH, A. Effects of active dry yeasts on the rumen microbial ecosystem: Past, present and future. In ANIMAL FEED SCIENCE AND TECHNOLOGY. ISSN 0377-8401, AUG 14 2008, vol. 145, no. 1-4, p. 5-26. EDEL-HERMANN, V. - GAUTHERON, N. - ALABOUVETTE, C. - STEINBERG, C. Fingerprinting methods to approach multitrophic interactions among microflora and microfauna communities in soil. In BIOLOGY AND FERTILITY OF SOILS. ISSN 0178-2762, AUG 2008, vol. 44, no. 7, p. 975-984. JANSSEN, P.H. - KIRS, M. Structure of the archaeal community of the rumen. In APPLIED AND ENVIRONMENTAL MICROBIOLOGY. ISSN 0099-2240, JUN 2008, vol. 74, no. 12, p. 3619-3625. DENG, W.D. - XI, D.M. - MAO, H.M. - WANAPAT, M. The use of molecular techniques based on ribosomal RNA and DNA for rumen microbial ecosystem studies: a review. In MOLECULAR BIOLOGY REPORTS. ISSN 0301-4851, JUN 2008, vol. 35, no. 2, p. 265-274. STROBEL, E. - SEELING, K. - TEBBE, C.C. Diversity responses of rumen microbial communities to Fusarium-contaminated feed, evaluated with rumen simulating technology. In ENVIRONMENTAL MICROBIOLOGY. ISSN 1462-2912, FEB 2008, vol. 10, no. 2, p. 483-496. SHI, P.J. - MENG, K. - ZHOU, Z.G. - WANG, Y.R. - DIAO, Q.Y. - YAO, B. The host species affects the microbial community in the goat rumen. In LETTERS IN APPLIED MICROBIOLOGY. ISSN 0266-8254, JAN 2008, vol. 46, no. 1, p. 132-135. NICHOLSON, M.J. - EVANS, P.N. - JOBLIN, K.N. Analysis of methanogen diversity in the rumen using temporal temperature gradient gel electrophoresis: Identification of uncultured methanogens. In MICROBIAL ECOLOGY. ISSN 0095-3628, JUL 2007, vol. 54, no. 1, p. 141-150. FIRKINS, J.L. - YU, Z. - MORRISON, M. Ruminal nitrogen metabolism: Perspectives for integration of microbiology and nutrition for dairy. In JOURNAL OF DAIRY SCIENCE. ISSN 0022-0302, 2007, vol. 90, p. E1-E16. McSWEENEY, C.S. - DENMAN, S.E. - WRIGHT, A.D.G. - YU, Z. Application of recent DNA/RNA-based techniques in rumen ecology. In ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES. ISSN 1011-2367, FEB 2007, vol. 20, no. 2, p. 283-294. KARNATI, S.K.R. - SYLVESTER, J.T. - NOFTSGER, S.M. - YU, Z. - ST-PIERRE, N.R. - FIRKINS, J.L. Assessment of ruminal bacterial populations and protozoal generation time in cows fed different methionine sources. In JOURNAL OF DAIRY SCIENCE, ISSN 0022-0302, 2007, vol. 90, no. 2, p. 798-809 CHEN, ZHEN-MING - ZHANG ZHAO-HUI - LIU JIAN-XIN. Cloning and Application of fibrilolytic enzyme coding genes from rumen microorganisms. In FEED INDUSTRY, 2007, vol. 28, no. 7, p. 61-64 YANG SHU-LI - WANG JIA-QI - BU DENG-PAN. Study on Quantification Methods of Rumen Microbes. In CHINA ANIMAL HUSBANDRY a. VETERINARY MEDICINE, 2007, vol. 34, no. 3, p. 5-8 TÓTHOVÁ, T. Eubakteriálny symbiont pôdneho prvoka Kahliella spp. In Vedecké práce doktorandov: zborník zo seminára doktorandov venovaného pamiatke akademika Boďu. ISBN 978-80-969788-4-7, 2007, II. ročník, Košice, ÚFHZ-SAV, s. 112-115 MARTIN, D.L. - ROSS, R.M. - QUETIN, L.B. - MURRAY, A.E. Molecular approach (PCR-DGGE) to diet analysis in young Antarctic krill Euphausia superba. MARINE ECOLOGY-PROGRESS SERIES. ISSN 0171-8630, 2006, vol. 319, p. 155-165. FERRER, M. - GOLYSHINA, O.V. - CHERNIKOVA, T.N. - KHACHANE, A.N. - REYES-DUARTE, D. - DOS SANTOS, V.A.P.M. - STROMPL, C. - ELBOROUGH, K. - JARVIS, G. - NEEF, A. - YAKIMOV, M.M. - TIMMIS, K.N. - GOLYSHIN, P.N. Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora. ENVIRONMENTAL MICROBIOLOGY. ISSN 1462-2912, DEC 2005, vol. 7, no. 12, p. 1996-2010. PERS-KAMCZYC, E. - ZMORA, P. - CIESLAK, A. - SZUMACHER-STRABEL, M. Development of nucleic acid based techniques and possibilities of their application to rumen microbial ecology research. In JOURNAL OF ANIMAL AND FEED SCIENCES. ISSN 1230-1388, 2011, vol. 20, no. 3, p. 315-337. SINGH, K.M. - TRIPATHI, A.K. - PANDYA, P.R. - RANK, D.N. - KOTHARI, R.K. - JOSHI, C.G. Dasytricha Dominance in Surti Buffalo Rumen Revealed by 18S rRNA Sequences and Real-Time PCR Assay. In CURRENT MICROBIOLOGY. ISSN 0343-8651, SEP 2011, vol. 63, no. 3, p. 281-288. ZHOU, Y.Y. - MAO, H.L. - JIANG, F. - WANG, J.K. - LIU, J.X. - MCSWEENEY, C.S. Inhibition of rumen methanogenesis by tea saponins with reference to fermentation pattern and microbial communities in Hu sheep. In ANIMAL FEED SCIENCE AND TECHNOLOGY. ISSN 0377-8401, JUN 23 2011, vol. 166-67, Sp. Iss. SI, p. 93-100. TAN, H.Y. - SIEO, C.C. - LEE, C.M. - ABDULLAH, N. - LIANG, J.B. - HO, Y.W. Diversity of Bovine Rumen Methanogens In Vitro in the Presence of Condensed Tannins, as Determined by Sequence Analysis of 16S rRNA Gene Library. In JOURNAL OF MICROBIOLOGY. ISSN 1225-8873, JUN 2011, vol. 49, no. 3, p. 492-498. KITTELMANN, S. - JANSSEN, P.H. Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries. In FEMS MICROBIOLOGY ECOLOGY. ISSN 0168-6496, MAR 2011, vol. 75, no. 3, p. 468-481. LENG, J. - ZHONG, X. - ZHU, R.J. - YANG, S.L. - GOU, X. - MAO, H.M. Assessment of protozoa in Yunnan Yellow Cattle rumen based on the 18S rRNA sequences. In MOLECULAR BIOLOGY REPORTS. ISSN 0301-4851, JAN 2011, vol. 38, no. 1, p. 577-585. BELANCHE, A. - BALCELLS, J. - DE LA FUENTE, G. - YANEZ-RUIZ, D.R. - FONDEVILA, M. - CALLEJA, L. Description of development of rumen ecosystem by PCR assay in milk-fed, weaned and finished lambs in an intensive fattening system. In JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION. ISSN 0931-2439, OCT 2010, vol. 94, no. 5, p. 648-658. NICHOLSON, M.J. - MCSWEENEY, C.S. - MACKIE, R.I. - BROOKMAN, J.L. - THEODOROU, M.K. Diversity of anaerobic gut fungal populations analysed using ribosomal ITS1 sequences in faeces of wild and domesticated herbivores. In ANAEROBE. ISSN 1075-9964, APR 2010, vol. 16, no. 2, p. 66-73. PRATES, A. - DE OLIVEIRA, J.A. - ABECIA, L. - FONDEVILA, M. Effects of preservation procedures of rumen inoculum on in vitro microbial diversity and fermentation. In ANIMAL FEED SCIENCE AND TECHNOLOGY. ISSN 0377-8401, FEB 10 2010, vol. 155, no. 2-4, p. 186-193. JOUSSET, A. - LARA, E. - NIKOLAUSZ, M. - HARMS, H. - CHATZINOTAS, A. Application of the denaturing gradient gel electrophoresis (DGGE) technique as an efficient diagnostic tool for ciliate communities in soil. In SCIENCE OF THE TOTAL ENVIRONMENT. ISSN 0048-9697, FEB 1 2010, vol. 408, no. 5, p. 1221-1225. LENG, J. - XIE, L.J. - ZHU, R.J. - YANG, S.L. - GOU, X. - LI, S. - MAO, H.M. Dominant bacterial communities in the rumen of Gayals (Bos frontalis), Yaks (Bos grunniens) and Yunnan Yellow Cattle (Bos taurs) revealed by denaturing gradient gel electrophoresis. MOLECULAR BIOLOGY REPORTS. ISSN 0301-4851, NOV 2011, vol. 38, no. 8, p. 4863-4872. TAN, H.Y. - SIEO, C.C. - ABDULLAH, N. - LIANG, J.B. - HUANG, X.D. - HO, Y.W. Effects of condensed tannins from Leucaena on methane production, rumen fermentation and populations of methanogens and protozoa in vitro. ANIMAL FEED SCIENCE AND TECHNOLOGY. ISSN 0377-8401, NOV 3 2011, vol. 169, no. 3-4, p. 185-193. MALIK, P. K. - SINGHAL, K. K. - DESHPANDE, S. B. - SIDDIQUE, R. A. Mitigation strategies for enteric methane emission with special emphasis on biological approaches: A review. INDIAN JOURNAL OF ANIMAL SCIENCES. ISSN 0367-8318, AUG 2012, vol. 82, no. 8, p. 794-804. HERNANDEZ-SANABRIA, Emma - GOONEWARDENE, Laksiri A. - WANG, Zhiquan - DURUNNA, Obioha N. - MOORE, Stephen S. - GUAN, Le Luo. Impact of Feed Efficiency and Diet on Adaptive Variations in the Bacterial Community in the Rumen Fluid of Cattle. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. ISSN 0099-2240, FEB 2012, vol. 78, no. 4, p. 1203-1214. KITTELMANN, Sandra - SEEDORF, Henning - WALTERS, William A. - CLEMENTE, Jose C. - KNIGHT, Rob - GORDON, Jeffrey I. - JANSSEN, Peter H. Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities. In PLOS ONE. ISSN 1932-6203, 2013, vol. 8, no. 2, pp. COPADO, R. - ARZOLA, C. - EPPS, S. V. R. - RODRIGUEZ-ALMEIDA, F. - RUIZ, O. - RODRIGUEZ-MUELA, C. - CASTILLO CASTILLO, Yamicela - CORRAL-LUNA, Agustin - SALINAS, J. Effect of Repeated Suboptimal Chlorate Treatment on Ruminal and Fecal Bacterial Diversity. In JOURNAL OF FOOD PROTECTION. ISSN 0362-028X, 2014, vol. 77, no. 9, pp. 1588. POPOVA, M. - MORGAVI, D. P. - DOREAU, M. - MARTIN, C. Methane production and ruminal microbial interactions. INRA PRODUCTIONS ANIMALES. ISSN 0990-0632, 2011, vol. 24, no. 5, p. 447-460. FIRKINS, J. L. - YU, Z. Characterisation and quantification of the microbial populations of the rumen. Ruminant Physiology: Digestion, Metabolism and Impact of Nutrition on Gene Expression, Immunology and Stress. 2006, p. 19-54. CHAUCHEYRAS-DURAND, Frédérique - OSSA, Faisury. The rumen microbiome: Composition, abundance, diversity, and new investigative tools. In Professional Animal Scientist. ISSN 10807446, 2014-02-01, 30, 1, pp. 1-12. ZHANG, J. - ZHAO, S.G. - ZHANG, Y.D. - SUN, P. - BU, D.P. - WANG, J.Q. New Primers Targeting Full-Length Ciliate 18S rRNA Genes and Evaluation of Dietary Effect on Rumen Ciliate Diversity in Dairy Cows. CURRENT MICROBIOLOGY. ISSN 0343-8651, DEC 2015, vol. 71, no. 6, p. 650-657. CEDROLA, F. - ROSSI, M. - DIAS, R.J.P. - MARTINELE, I. - D'AGOSTO, M. Methods for Taxonomic Studies of Rumen Ciliates (Alveolata: Ciliophora): A Brief Review. ZOOLOGICAL SCIENCE. ISSN 0289-0003, JAN 2015, vol. 32, no. 1, p. 8-15. REIS, W.L.S. - DETMANN, E. - BATISTA, E.D. - RUFINO, L.M.A. - GOMES, D.I. - BENTO, C.B.P. - MANTOVANI, H.C. - VALADARES, S.C. Effects of ruminal and post-ruminal protein supplementation in cattle fed tropical forages on insoluble fiber degradation, activity of fibrolytic enzymes, and the ruminal microbial community profile. ANIMAL FEED SCIENCE AND TECHNOLOGY. ISSN 0377-8401, AUG 2016, vol. 218, p. 1-16. SHAH, R.K. - PATEL, A.K. - SHAH, T.M. - SINGH, K.M. - NATHANI, N.M. - JOSHI, C.G. Analysis of community structure and species richness of protozoa-enriched rumen metagenome from Indian Surti by shotgun sequencing. CURRENT SCIENCE. ISSN 0011-3891, JUL 10 2016, vol. 111, no. 1, p. 184-191. KITTELMANN, S. - PINARES-PATINO, C.S. - SEEDORF, H. - KIRK, M.R. - MCEWAN, J.C. - JANSSEN, P.H. Natural variation in methane emission of sheep fed on a lucerne pellet diet is unrelated to rumen ciliate community type. MICROBIOLOGY-SGM. ISSN 1350-0872, MAR 2016, vol. 162, 3, p. 459-465. SAMINATHAN, M. - GAN, H.M. - ABDULLAH, N. - WONG, C.M.V.L. - RAMIAH, S.K. - TAN, H.Y. - SIEO, C.C. - HO, Y.W. Changes in rumen protozoal community by condensed tannin fractions of different molecular weights from a Leucaena leucocephala hybrid invitro. JOURNAL OF APPLIED MICROBIOLOGY. ISSN 1364-5072, JUL 2017, vol. 123, no. 1, p. 41-53. MOLINA-ALCAIDE, E. - CARRO, M.D. - ROLEDA, M.Y. - WEISBJERG, M.R. - LIND, V. - NOVOA-GARRIDO, M. In vitro ruminal fermentation and methane production of different seaweed species. ANIMAL FEED SCIENCE AND TECHNOLOGY. ISSN 0377-8401, JUN 2017, vol. 228, p. 1-12. MARIA BOLIVAR, Ana - ROJAS-ESTABA, Agustina - TORRES, Yzoleth - GARCIA-LUGO, Pablo. PCR/DGGE System for detection of microorganisms in bovine blood stream established in cattle livestock regions of Merida State, Venezuela. In REVISTA CIENTIFICA-FACULTAD DE CIENCIAS VETERINARIAS. ISSN 0798-2259, 2018, vol. 28, no. 1, pp. 63-71. LAN, Wei - YANG, Chunlei. Ruminal methane production: Associated microorganisms and the potential of applying hydrogen-utilizing bacteria for mitigation. In SCIENCE OF THE TOTAL ENVIRONMENT. ISSN 0048-9697, 2019, vol. 654, no., pp. 1270-1283. HIGINO, Bruna de Souza Silva - DE TARSO, Saulo Gusmão Silva. The rumen as a health thermometer: Literature review. In Medicina Veterinaria (Brazil), 2019-01-01, 13, 3, pp. 309-317. ISSN 18094678. Dostupné na: https://doi.org/10.26605/medvet-v13n3-3287. NATH, Dibyojyoty - GHANGREKAR, M. M. Plant secondary metabolites induced electron flux in microbial fuel cell: investigation from laboratory-to-field scale. In SCIENTIFIC REPORTS. ISSN 2045-2322, 2020, vol. 10, no. 1, art. no. 171185 Dostupné na: https://doi.org/10.1038/s41598-020-74092-y. FIRKINS, Jeffrey L. - YU, Zhongtang - PARK, Tansol - PLANK, Johanna E. Extending Burk Dehority's Perspectives on the Role of Ciliate Protozoa in the Rumen. In FRONTIERS IN MICROBIOLOGY, 2020, vol. 11, art. no. 123 Dostupné na: https://doi.org/10.3389/fmicb.2020.00123. KUSHKEVYCH, Ivan - HYZOVA, Blanka - VITEZOVA, Monika - RITTMANN, Simon K.M. R. Microscopic Methods for Identification of Sulfate-Reducing Bacteria from Various Habitats. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, vol. 22, no. 8, pp. Dostupné na: https://doi.org/10.3390/ijms22084007. LIAQAT, A. - ZAHRA, I. - ABBAS, S.Z. - WABAIDUR, S.M. - ELDESOKY, G.E. - ISLAM, M.A. - RAFATULLAH, M. - SHAKOORI, F.R. - SHAKOORI, A.R. Copper Bioremediation Ability of Ciliate iParamecium multimicronucleatum/i Isolated from Industrial Wastewater. In WATER. MAY 2022, vol. 14, no. 9. Dostupné na: https://doi.org/10.3390/w14091419. RYU, C.H. - BANG, H.T. - LEE, S. - KIM, B. - BAEK, Y.C. Effects of Feed Composition in Different Growth Stages on Rumen Fermentation and Microbial Diversity of Hanwoo Steers. In ANIMALS. ISSN 2076-2615, OCT 2022, vol. 12, no. 19. Dostupné na: https://doi.org/10.3390/ani12192606. Category ADCA - Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2004 Registered in WOS Registered in SCOPUS DOI 10.1111/j.1472-765X.2004.01542.x 
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rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2004 2003 1.164
Number of the records: 1