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Role of conformational flexibility for enzymatic activity in NADH oxidase from Thermus thermophilus
Title Role of conformational flexibility for enzymatic activity in NADH oxidase from Thermus thermophilus Author Žoldák Gabriel Co-authors Šuťák Róbert Antalík Marián 1952- SAVEXFYZ - Ústav experimentálnej fyziky SAV Sprinzl Mathias Sedlák Erik Source document European Journal of Biochemistry. Vol. 270, no. 24 (2003), p. 4887-4897 Language eng - English Document kind rozpis článkov z periodík (rbx) Citations SINGH, R. - WISEMAN, B. - DEEMAGARN, T. - DONALD, L.J. - DUCKWORTH, H.W. - CARPENA, X. - FITA, I. - LOEWEN, P.C. Catalase-peroxidases (KatG) exhibit NADH oxidase activity. In JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, vol. 279, no. 41, p. 43098-43106. SECUNDO, F. - RUSSO, C. - GIORDANO, A. - CARREA, G. - ROSSI, M. - RAIA, C.A. Temperature-induced conformational change at the catalytic site of Sulfolobus solfataricus alcohol dehydrogenase highlighted by Asn249Tyr substitution. A hydrogen/deuterium exchange, kinetic, and fluorescence quenching study. In BIOCHEMISTRY, 2005, vol. 44, no. 33, p. 11040-11048. MIYASHITA, O. - WOLYNES, P.G. - ONUCHIC, J.N. Simple energy landscape model for the kinetics of functional transitions in proteins. In JOURNAL OF PHYSICAL CHEMISTRY B, 2005, vol. 109, no. 5, p. 1959-1969. SERBAN, S. - EL MURR, N. Redox-flexible NADH oxidase biosensor: A platform for various dehydrogenase bioassays and biosensors. In ELECTROCHIMICA ACTA, 2006, vol. 51, no. 24, p. 5143-5149. BONVIN, J. - APONTE, R.A. - MARCANTONIO, M. - SINGH, S. - CHRISTENDAT, D. - TURNBULL, J.L. Biochemical characterization of prephenate dehydrogenase from the hyperthermophilic bacterium Aquifex aeolicus. In PROTEIN SCIENCE, 2006, vol. 15, no. 6, p. 1417-1432. SINGH, V.P. Mg2+ decreases Arrhenius energies of activation for high temperature catalysis of phosphatases in Thermoactinomyces vulgaris. In CURRENT MICROBIOLOGY, 2007, vol. 55, no. 3, p. 179-184. FINDRIK, Z. - SIMUNOVIC, I. - VASIC-RACKI, D. Coenzyme regeneration catalyzed by NADH oxidase from Lactobacillus brevis in the reaction of L-amino acid oxidation. In BIOCHEMICAL ENGINEERING JOURNAL, 2008, vol. 39, no. 2, p. 319-327. GURBAN, A.M. - NOGUER, T. - BALA, C. - ROTARIU, L. Improvement of NADH detection using Prussian blue modified screen-printed electrodes and different strategies of immobilisation. In SENSORS AND ACTUATORS B-CHEMICAL, 2008, vol. 128, no. 2, p. 536-544. PRIYAM, A. - CHATTERJEE, A. - BHATTACHARYA, S.C. - SAHA, A. Conformation and activity dependent interaction of glucose oxidase with CdTe quantum dots: towards developing a nanoparticle based enzymatic assay. In PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES, 2009, vol. 8, no. 3, p. 362-370. MERKLEY, E.D. - PARSON, W.W. - DAGGETT, V. Temperature dependence of the flexibility of thermophilic and mesophilic flavoenzymes of the nitroreductase fold. In PROTEIN ENGINEERING DESIGN & SELECTION, 2010, vol. 23, no. 5, p. 327-336. RASHID, N. - HAMEED, S. - SIDDIQUI, M.A. - IKRAM-UL-HAQ. Gene cloning and characterization of NADH oxidase from Thermococcus kodakarensis. In AFRICAN JOURNAL OF BIOTECHNOLOGY. DEC 7 2011, vol. 10, no. 78, p. 17916-17924. MILETTI, T. - FARBER, P.J. - MITTERMAIER, A. Active site dynamics in NADH oxidase from Thermus thermophilus studied by NMR spin relaxation. In JOURNAL OF BIOMOLECULAR NMR. SEP 2011, vol. 51, no. 1-2, p. 71-82. ZHAO, Q.Y. Dynamic Model for Enzyme Action. In PROTEIN AND PEPTIDE LETTERS. 2011, vol. 18, no. 1, p. 92-99. ZHAO, Qinyi. Partition Function of the Protein Conformational State. In JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE, 2012, vol. 9, no. 5, p. 745-751. MERKLEY, E.D. - DAGGETT, V. - PARSON, W.W. A temperature-dependent conformational change of NADH oxidase from Thermus thermophilus HB8. In Proteins: Structure, Function and Bioinformatics, 2012, 80, 2, p. 546-555. VARHAC, Rastislav. Urea-induced modification of cytochrome c flexibility as probed by cyanide binding. In BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. ISSN 1570-9639, 2013, vol. 1834, no. 4, pp. 739. CRONIN, Melissa - COOLBAUGH, Michael J. - NELLIS, David - ZHU, Jianwei - WOOD, David W. - NUSSINOV, Ruth - MA, Buyong. Dynamics differentiate between active and inactive inteins. In EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY. ISSN 0223-5234, 2015, vol. 91, pp. 51. TRUNG QUAN LUONG - WINTER, Roland. Combined pressure and cosolvent effects on enzyme activity a high-pressure stopped-flow kinetic study on alpha-chymotrypsin. In PHYSICAL CHEMISTRY CHEMICAL PHYSICS. ISSN 1463-9076, 2015, vol. 17, no. 35, pp. 23273. ZHAO, Qinyi. A thermodynamic and theoretical view for enzyme regulation. In BIOCHEMISTRY-MOSCOW. ISSN 0006-2979, 2015, vol. 80, no. 1, pp. 1. MILETTI, Teresa - DI TRANI, Justin - LEVROS, Louis-Charles - MITTERMAIER, Anthony. Conformational plasticity surrounding the active site of NADH oxidase from Thermus thermophilus. In PROTEIN SCIENCE. ISSN 0961-8368, 2015, vol. 24, no. 7, pp. 1114. HANSEN, Lee D. - TRANSTRUM, Mark K. - QUINN, Colette - DEMARSE, Neil. Enzyme-catalyzed and binding reaction kinetics determined by titration calorimetry. In BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS. ISSN 0304-4165, 2016, vol. 1860, no. 5, pp. 957-966. MAITI, Susmita - KUNDU, Somashree - ROY, Chandra Nath - GHOSH, Debasmita - DAS, Tushar Kanti - SAHA, Abhijit. A comparative evaluation of the activity modulation of flavo and non-flavo enzymes induced by graphene oxide. In JOURNAL OF MATERIALS CHEMISTRY B. ISSN 2050-750X, 2017, vol. 5, no. 14, pp. 2601-2608. Category ADCA - Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2003 Registered in WOS Registered in SCOPUS Registered in CCC DOI 10.1046/j.1432-1033.2003.03889.x 
article
rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2003 2002 2.999
Number of the records: 1