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Need for database extension for reliable identification of bacteria from extreme environments using MALDI TOF mass spectrometry
Title Need for database extension for reliable identification of bacteria from extreme environments using MALDI TOF mass spectrometry Author Kopčáková Anna 1984- SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV SCOPUS RID ORCID Co-authors Stramová Zuzana SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV Kvasnová S. Godány Andrej SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Perháčová Zuzana Pristaš Peter 1962 SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV SCOPUS RID ORCID Source document Chemical Papers. Vol. 68 (2014), p. 1435–1442 Language eng - English Country SK - Slovak Republic Document kind rozpis článkov z periodík (rbx) Citations POPOVIC, N.T. - KAZAZIC, S.P. - STRUNJAK-PEROVIC, I. - COZ-RAKOVAC, R. Differentiation of environmental aquatic bacterial isolates by MALDI-TOF MS. ENVIRONMENTAL RESEARCH. ISSN 0013-9351, 2017, vol. 152, p. 7-16. RAHI, P. - PRAKASH, O. - SHOUCHE, Y.S. Matrix-Assisted Laser Desorption/lonization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists. FRONTIERS IN MICROBIOLOGY, vol. 7, 2016. ISSN 1664-302X SWAROOP, B.S. - VICTORIA, S.N. - MANIVANNAN, R. Azadirachta indica leaves extract as inhibitor for microbial corrosion of copper by Arthrobacter sulfureus in neutral pH conditions-A remedy to blue green water problem. JOURNAL OF THE TAIWAN INSTITUTE OF CHEMICAL ENGINEERS. ISSN 1876-1070, JUL 2016, vol. 64, p. 269-278. BOUMEHIRA, A.Z. - EL-ENSHASY, H.A. - HACENE, H. - ELSAYED, E.A. - AZIZ, R. - PARK, E.Y. Recent progress on the development of antibiotics from the genus Micromonospora. BIOTECHNOLOGY AND BIOPROCESS ENGINEERING. ISSN 1226-8372, MAR 2016, vol. 21, no. 2, p. 199-223. BEALE, D.J. - KARPE, A.V. - JADHAV, S. - MUSTER, T.H. - PALOMBO, E.A. Omics-based approaches and their use in the assessment of microbial-influenced corrosion of metals. CORROSION REVIEWS. ISSN 0334-6005, MAR 2016, vol. 34, no. 1-2, p. 1-15. SANTOS, I.C. - HILDENBRAND, Z.L. - SCHUG, K.A. Applications of MALDI-TOF MS in environmental microbiology. ANALYST. ISSN 0003-2654, 2016, vol. 141, no. 10, p. 2827-2837. SCERBOVA, Jana - LAUKOVA, Andrea. Sensitivity to Enterocins of Thermophilic Campylobacter spp. from Different Poultry Species. In FOODBORNE PATHOGENS AND DISEASE. ISSN 1535-3141, 2016, vol. 13, no. 12, pp. 668-673. CIHALOVA, Kristyna - DOSTALOVA, Simona - HEGEROVA, Dagmar - SKALICKOVA, Sylvie - VACULOVICOVA, Marketa - KIZEK, Rene - KOPEL, Pavel. RAPID IDENTIFICATION OF BACTERIA BY BIOBARCODE ASSAY. In MENDELNET 2015, 2015, vol., no., pp. 448-452. AVANZI, Ingrid Regina - GRACIOSO, Louise Hase - GALLUZZI BALTAZAR, Marcela dos Passos - KAROLSKI, Bruno - PERPETUO, Elen Aquino - OLLER DO NASCIMENTO, Claudio Augusto. Rapid bacteria identification from environmental mining samples using MALDI-TOF MS analysis. In ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. ISSN 0944-1344, 2017, vol. 24, no. 4, pp. 3717-3726. TIMPERIO, Anna Maria - GORRASI, Susanna - ZOLLA, Lello - FENICE, Massimiliano. Evaluation of MALDI-TOF mass spectrometry and MALDI BioTyper in comparison to 16S rDNA sequencing for the identification of bacteria isolated from Arctic sea water. In PLOS ONE. ISSN 1932-6203, 2017, vol. 12, no. 7,art. no. e0181860. WEI, Min - XU, Caihong - CHEN, Jianmin - ZHU, Chao - LI, Jiarong - LV, Ganglin. Characteristics of bacterial community in cloud water at Mt Tai: similarity and disparity under polluted and non-polluted cloud episodes. In ATMOSPHERIC CHEMISTRY AND PHYSICS. ISSN 1680-7316, 2017, vol. 17, no. 8, pp. 5253-5270. Zhang, L., Sandrin, T.R. 2016 Maximizing the taxonomic resolution of MALDI-TOF-MS-based approaches to bacterial characterization: From culture conditions through data analysis IN 2016 Applications of Mass Spectrometry in Microbiology: From Strain Characterization to Rapid Screening for Antibiotic Resistance pp. 147-181 Spitaels, F., Wieme, A.D., Vandamme, P. MALDI-TOF MS as a novel tool for dereplication and characterization of microbiota in bacterial diversity studies IN 2016 Applications of Mass Spectrometry in Microbiology: From Strain Characterization to Rapid Screening for Antibiotic Resistance pp. 235-256 KURTBÓKE, D. Ecology and habitat distribution of actinobacteria. In Biology and Biotechnology of Actinobacteria, 2017-01-01, pp. 123-149. MEYER, Birte - RABENSTEIN, Andreas - KUEVER, Jan. Mass spectrometry: A powerful tool for the identification of wine-related bacteria and yeasts. In Biology of Microorganisms on Grapes, in Must and in Wine, 2017-01-01, pp. 659-701. JANG, K.S. - KIM, Y.H. Rapid and robust MALDI-TOF MS techniques for microbial identification: a brief overview of their diverse applications. In JOURNAL OF MICROBIOLOGY. APR 2018, vol. 56, no. 4, p. 209-216. LAUKOVA, A. - STROMPFOVA, V. - SCERBOVA, J. - SIMONOVA, M.P. Virulence Factor Genes Incidence among Enterococci from Sewage Sludge in Eastern Slovakia following Safety Aspect. In BIOMED RESEARCH INTERNATIONAL. ISSN 2314-6133, OCT 7 2019, vol. 2019, art. no. 2735895. HUSCHEK, D. - WITZEL, K. Rapid dereplication of microbial isolates using matrix-assisted laser desorption ionization time-of-flight mass spectrometry: A mini-review. In JOURNAL OF ADVANCED RESEARCH. ISSN 2090-1232, SEP 2019, vol. 19, SI, p. 99-104. POMASTOWSKI, P. - ZLOCH, M. - RODZIK, A. - LIGOR, M. - KOSTRZEWA, M. - BUSZEWSKI, B. Analysis of bacteria associated with honeys of different geographical and botanical origin using two different identification approaches: MALDI-TOF MS and 16S rDNA PCR technique. In PLOS ONE. ISSN 1932-6203, MAY 23 2019, vol. 14, no. 5. YIN, M.Y. - WU, C. - LI, H.J. - JIA, Z.X. - DENG, Q.L. - WANG, S. - ZHANG, Y.K. Simultaneous Sensing of Seven Pathogenic Bacteria by Guanidine-Functionalized Upconversion Fluorescent Nanoparticles. In ACS OMEGA. ISSN 2470-1343, MAY 2019, vol. 4, no. 5, p. 8953-8959. ANTUNES, T.C. - BALLARINI, A.E. - VAN DER SAND, S. Temporal variation of bacterial population and response to physical and chemical parameters along a petrochemical industry wastewater treatment plant. In ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS. ISSN 0001-3765, 2019, vol. 91, no. 2, art. no. e20180394. BROCKMANN, M. - AUPPERLE-LELLBACH, H. - GENTIL, M. - HEUSINGER, A. - MULLER, E. - MARSCHANG, R.E. - PEES, M. Challenges in microbiological identification of aerobic bacteria isolated from the skin of reptiles. In PLOS ONE. ISSN 1932-6203, OCT 19 2020, vol. 15, no. 10. JANKOSKI, P.R. - CORREA, A.P.F. - BRANDELLI, A. - DA MOTTA, A.S. Biological activity of bacteria isolated from wetland sediments collected from a conservation unit in the southern region of Brazil. In ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS. ISSN 0001-3765, 2021, vol. 93, no. 3. Dostupné na: https://doi.org/10.1590/0001-3765202120191269. LARA, B.G. - WROBEL, K. - ESCOBOSA, A.R.C. - TORRES, O.S. - DONIS, I.E. - WROBEL, K. Mass spectrometry-based identification of bacteria isolated from industrially contaminated site in Salamanca (Mexico) and evaluation of their potential for DDT degradation. In FOLIA MICROBIOLOGICA. ISSN 0015-5632, JUN 2021, vol. 66, no. 3, p. 355-369. Dostupné na: https://doi.org/10.1007/s12223-020-00848-8. DESIDERATO, C.K. - SACHSENMAIER, S. - OVCHINNIKOV, K.V. - STOHR, J. - JACKSCH, S. - DESEF, D.N. - CRAUWELS, P. - EGERT, M. - DIEP, D.B. - GOLDBECK, O. - RIEDEL, C.U. Identification of Potential Probiotics Producing Bacteriocins Active against Listeria monocytogenes by a Combination of Screening Tools. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. AUG 2021, vol. 22, no. 16. Dostupné na: https://doi.org/10.3390/ijms22168615. PINAR-MENDEZ, A. - FERNANDEZ, S. - BAQUERO, D. - VILARO, C. - GALOFRE, B. - GONZALEZ, S. - RODRIGO-TORRES, L. - ARAHAL, D.R. - MACIAN, M.C. - RUVIRA, M.A. - AZNAR, R. - CAUDET-SEGARRA, L. - SALA-COMORERA, L. - LUCENA, F. - BLANCH, A.R. - GARCIA-ALJARO, C. Rapid and improved identification of drinking water bacteria using the Drinking Water Library, a dedicated MALDI-TOF MS database. In WATER RESEARCH. ISSN 0043-1354, SEP 15 2021, vol. 203. Dostupné na: https://doi.org/10.1016/j.watres.2021.117543. JHARIYA, Upasana - PAL, Sukdeb. Proteomic, Genomic, and Metabolomic Understanding and Designing for Bioremediation of Environmental Contaminants. In Omics Insights in Environmental Bioremediation, 2022-01-01, pp. 415-435. Dostupné na: https://doi.org/10.1007/978-981-19-4320-1_18. Category ADDA - Scientific papers in domestic journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2014 Registered in WOS Registered in SCOPUS Registered in CCC DOI 10.2478/s11696-014-0612-0 
article
rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2014 2013 1.193 Q3 0.308 Q2
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