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In Silico and in Vitro Study of Binding Affinity of Tripeptides to Amyloid beta Fibrils: Implications for Alzheimer's Disease
Title In Silico and in Vitro Study of Binding Affinity of Tripeptides to Amyloid beta Fibrils: Implications for Alzheimer's Disease Author Viet M.H. Co-authors Šipošová Katarína 1982 SAVEXFYZ - Ústav experimentálnej fyziky SAV ORCID Bednáriková Zuzana 1988 SAVEXFYZ - Ústav experimentálnej fyziky SAV SCOPUS ORCID Antošová Andrea 1981 SAVEXFYZ - Ústav experimentálnej fyziky SAV SCOPUS SCOPUS ORCID Nguyen T. Trang Gažová Zuzana 1961- SAVEXFYZ - Ústav experimentálnej fyziky SAV SCOPUS RID ORCID Suan Li Mai Source document Journal of Physical Chemistry B. Vol. 119, no. 16 (2015), p. 5145-5155 Language eng - English Document kind rozpis článkov z periodík (rbx) Citations RATHA, Bhisma N. - GHOSH, Anirban - BRENDER, Jeffrey R. - GAYEN, Nilanjan - ILYAS, Humaira - NEERAJA, Chilukoti - DAS, Kali P. - MANDAL, Atin K. - BHUNIA, Anirban. Inhibition of Insulin Amyloid Fibrillation by a Novel Amphipathic Heptapeptide: MECHANISTIC DETAILS STUDIED BY SPECTROSCOPY IN COMBINATION WITH MICROSCOPY. In JOURNAL OF BIOLOGICAL CHEMISTRY. ISSN 0021-9258, 2016, vol. 291, no. 45, pp. 23545-23556. GOYAL, Deepti - SHUAIB, Suniba - MANN, Sukhmani - GOYAL, Bhupesh. Rationally Designed Peptides and Peptidomimetics as Inhibitors of Amyloid-beta (A beta) Aggregation: Potential Therapeutics of Alzheimer's Disease. In ACS COMBINATORIAL SCIENCE. ISSN 2156-8952, 2017, vol. 19, no. 2, pp. 55-80. MELCHOR, Martinez-Herrera - SUSANA, Figueroa-Gerstenmaier - FRANCISCO, Garcia-Sierra - HIRAM, Beltran - NORMA, Rivera-Fernandez - JORGE A, Lerma-Romero - PERLA Y, Lopez-Camacho - GUSTAVO, Basurto-Islas. Fullerenemalonates inhibit amyloid beta aggregation, in vitro and in silico evaluation. In RSC ADVANCES. ISSN 2046-2069, 2018, vol. 8, no. 69, pp. 39667-39677. LINH TRAN. Understanding the Binding Mechanism of Amyloid-beta Inhibitors from Molecular Simulations. In CURRENT PHARMACEUTICAL DESIGN. ISSN 1381-6128, 2018, vol. 24, no. 28, pp. 3341-3346. LINH TRAN - KAFFY, Julia - ONGERI, Sandrine - TAP HA-DUONG. Binding Modes of a Glycopeptidomimetic Molecule on A beta Protofibrils: Implication for Its Inhibition Mechanism. In ACS CHEMICAL NEUROSCIENCE. ISSN 1948-7193, 2018, vol. 9, no. 11, pp. 2859-+. RYAN, Philip - PATEL, Bhautikkumar - MAKWANA, Vivek - JADHAV, Hemant R. - KIEFEL, Milton - DAVEY, Andrew - REEKIE, Tristan A. - RUDRAWAR, Santosh - KASSIOU, Michael. Peptides, Peptidomimetics, and Carbohydrate-Peptide Conjugates as Amyloidogenic Aggregation Inhibitors for Alzheimer's Disease. In ACS CHEMICAL NEUROSCIENCE. ISSN 1948-7193, 2018, vol. 9, no. 7, pp. 1530-1551. AWASTHI, Manika - SINGH, Swati - PANDEY, Veda P. - DWIVEDI, Upendra N. Modulation in the conformational and stability attributes of the Alzheimer's disease associated amyloid-beta mutants and their favorable stabilization by curcumin: molecular dynamics simulation analysis. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. ISSN 0739-1102, 2018, vol. 36, no. 2, pp. 407-422. GHORBANI, Mohammad - SOLEYMANI, Hossein - ALLAHVERDI, Abdollah - SHOJAEILANGARI, Seyedehsamaneh - NADERI-MANESH, Hossein. Effects of natural compounds on conformational properties and hairpin formation of amyloid-beta(42) monomer: docking and molecular dynamics simulation study. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. ISSN 0739-1102, 2019. KANCHI, Pavan Krishna - DASMAHAPATRA, Ashok Kumar. Polyproline chains destabilize the Alzheimer's amyloid-beta protofibrils: A molecular dynamics simulation study. In JOURNAL OF MOLECULAR GRAPHICS & MODELLING. ISSN 1093-3263, 2019, vol. 93. KANCHI, Pavan Krishna - DASMAHAPATRA, Ashok Kumar. Destabilization of the Alzheimer's amyloid-beta peptide by a proline-rich beta-sheet breaker peptide: a molecular dynamics simulation study. In JOURNAL OF MOLECULAR MODELING. ISSN 1610-2940, 2021, vol. 27, no. 12, pp. Dostupné na: https://doi.org/10.1007/s00894-021-04968-x. CAO, Yujuan - HE, Zhenyan - GAO, Yuting - XIN, Yanru - LUO, Liang - MENG, Fanling. Boosting the Photodynamic Degradation of Islet Amyloid Polypeptide Aggregates Via a "Bait-Hook-Devastate" Strategy. In ACS APPLIED MATERIALS & INTERFACES. ISSN 1944-8244, 2021, vol. 13, no. 13, pp. 14911-14919. Dostupné na: https://doi.org/10.1021/acsami.1c00082. KANCHI, Pavan Krishna - DASMAHAPATRA, Ashok Kumar. Enhancing the binding of the beta-sheet breaker peptide LPFFD to the amyloid-beta fibrils by aromatic modifications: A molecular dynamics simulation study. In COMPUTATIONAL BIOLOGY AND CHEMISTRY. ISSN 1476-9271, 2021, vol. 92, no., pp. Dostupné na: https://doi.org/10.1016/j.compbiolchem.2021.107471. MAHMOUDINOBAR, Farbod - NILSSON, Bradley L. - DIAS, Cristiano L. Effects of Ions and Small Compounds on the Structure of A beta(42) Monomers. In JOURNAL OF PHYSICAL CHEMISTRY B. ISSN 1520-6106, 2021, vol. 125, no. 4, pp. 1085-1097. Dostupné na: https://doi.org/10.1021/acs.jpcb.0c09617. MAN, Viet Hoang - HE, Xibing - WANG, Junmei. Stable Cavitation Interferes with A?(16)-(22) Oligomerization. In JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2022, vol. 62, no. 16, pp. 3885-3895. ISSN 1549-9596. Dostupné na: https://doi.org/10.1021/acs.jcim.2c00764. JARMULA, Adam - ZUBALSKA, Monika - STEPKOWSKI, Dariusz. Consecutive Aromatic Residues Are Required for Improved Efficacy of beta-Sheet Breakers. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, vol. 23, no. 9, pp. Dostupné na: https://doi.org/10.3390/ijms23095247. Category ADCA - Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2015 Registered in WOS Registered in SCOPUS Registered in CCC DOI 10.1021/acs.jpcb.5b00006 
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rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2015 2014 3.302 Q2 1.449 Q1
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