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Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action
Title Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action Author Leese Florian Co-authors Bouchez Agnès Abarenkov Kessy Altermatt Florian Borja Ángel Bruce Kat Ekrem Torbjørn Čiampor Fedor SAVBOTAN - Botanický ústav SAV ORCID Čiamporová-Zaťovičová Zuzana SAVBOTAN - Botanický ústav SAV ORCID Costa Filipe Duarte Sofia Elbrecht Vasco Fontaneto Diego Franc Alain Geiger Matthias F. Hering Daniel Kahlert Maria Stroil Belma Kalamujic Kelly Martyn G. Keskin Emre Liska Igor Mergen Patricia Meissner Kristian Pawlowski Jan Penev Lyubomir Reyjol Yorick Rotter Ana Steinke Dirk Wal Bas van der Vitecek Simon Zimmermann Jonas Weigand Alexander M. Source document Advances in Ecological Research. Vol. 58 (2018), p. 63-99 Language eng - English Country US - United States of America Document kind rozpis článkov z periodík (rbx) Citations DUMBRELL, Alex J. - WOODWARD, Guy - JACKSON, Michelle C. - BOHAN, David A. ADVANCES IN ECOLOGICAL RESEARCH PREFACE. In NEXT GENERATION BIOMONITORING, PT 2. ISSN 0065-2504, 2018, vol. 59, 2, p. XIII-XVI. HAJIBABAEI, Mehrdad - PORTER, Teresita M. - WRIGHT, Michael - RUDAR, Josip. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. In PLOS ONE. ISSN 1932-6203, SEP 12 2019, vol. 14, no. 9. FERNANDES, Kristen - VAN DER HEYDE, Mieke - COGHLAN, Megan - WARDELL-JOHNSON, Grant - BUNCE, Michael - HARRIS, Richard - NEVILL, Paul. Invertebrate DNA metabarcoding reveals changes in communities across mine site restoration chronosequences. In RESTORATION ECOLOGY. ISSN 1061-2971, SEP 2019, vol. 27, no. 5, p. 1177-1186. BAGLEY, Mark - PILGRIM, Erik - KNAPP, Martin - YODER, Chris - DOMINGO, Jorge Santo - BANERJI, Aabir. High-throughput environmental DNA analysis informs a biological assessment of an urban stream. In ECOLOGICAL INDICATORS. ISSN 1470-160X, SEP 2019, vol. 104, p. 378-389. BELLE, Christina C. - STOECKLE, Bernhard C. - GEIST, Juergen. Taxonomic and geographical representation of freshwater environmental DNA research in aquatic conservation. In AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS. ISSN 1052-7613, NOV 2019, vol. 29, no. 11, p. 1996-2009. KOWALSKA, Zuzanna - PNIEWSKI, Filip - LATALA, Adam. DNA barcoding - A new device in phycologist's toolbox. In ECOHYDROLOGY & HYDROBIOLOGY. ISSN 1642-3593, JUL 2019, vol. 19, no. 3, p. 417-427. BARSOUM, N. - BRUCE, C. - FORSTER, J. - JI, Y.Q. - YU, D.W. The devil is in the detail: Metabarcoding of arthropods provides a sensitive measure of biodiversity response to forest stand composition compared with surrogate measures of biodiversity. In ECOLOGICAL INDICATORS. ISSN 1470-160X, JUN 2019, vol. 101, p. 313-323. COMPSON, Zacchaeus G. - MONK, Wendy A. - HAYDEN, Brian - BUSH, Alex - O'MALLEY, Zoë - HAJIBABAEI, Mehrdad - PORTER, Teresita M. - WRIGHT, Michael T.G. - BAKER, Christopher J.O. - AL MANIR, Mohammad Sadnan - CURRY, R. Allen - BAIRD, Donald J. Network-Based Biomonitoring: Exploring Freshwater Food Webs With Stable Isotope Analysis and DNA Metabarcoding. In Frontiers in Ecology and Evolution, 2019, vol. 7, art. no. 395 BUSH, Alex - COMPSON, Zacchaeus G. - MONK, Wendy A. - PORTER, Teresita M. - STEEVES, Royce - EMILSON, Erik - GAGNE, Nellie - HAJIBABAEI, Mehrdad - ROY, Mélanie - BAIRD, Donald J. Studying Ecosystems With DNA Metabarcoding: Lessons From Biomonitoring of Aquatic Macroinvertebrates. In Frontiers in Ecology and Evolution, 2019, vol. 7, art. no. 434 FERNÁNDEZ, S., RODRÍGUEZ‐MARTÍNEZ, S., GARCIA‐VAZQUEZ, E. & ARDURA, A. How can eDNA contribute in riverine macroinvertebrate assessment? A metabarcoding approach in the Nalón River (Asturias, Northern Spain). In Environmental DNA, 2019, vol. 1, p. 385-401. ISSN 2637-4943. LIU, M.X. - CLARKE, L.J. - BAKER, S.C. - JORDAN, G.J. - BURRIDGE, C.P. A practical guide to DNA metabarcoding for entomological ecologists. In ECOLOGICAL ENTOMOLOGY. ISSN 0307-6946, JUN 2020, vol. 45, no. 3, p. 373-385. BUSH, A. - MONK, W.A. - COMPSON, Z.G. - PETERS, D.L. - PORTER, T.M. - SHOKRALLA, S. - WRIGHT, M.T.G. - HAJIBABAEI, M. - BAIRD, D.J. DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness. In PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. ISSN 0027-8424, APR 14 2020, vol. 117, no. 15, p. 8539-8545. PICOT, A. - COBO-DIAZ, J.F. - PAWTOWSKI, A. - DONOT, C. - LEGRAND, F. - LE FLOCH, G. - DENIEL, F. Water Microbiota in Greenhouses With Soilless Cultures of Tomato by Metabarcoding and Culture-Dependent Approaches. In FRONTIERS IN MICROBIOLOGY. JUN 23 2020, vol. 11. GRAPCI-KOTORI, L. - VAVALIDIS, T. - ZOGARIS, D. - SANDA, R. - VUKIC, J. - GECI, D. - IBRAHIMI, H. - BILALLI, A. - ZOGARIS, S. Fish distribution patterns in the White Drin (Drini i Bardhe) river, Kosovo. In KNOWLEDGE AND MANAGEMENT OF AQUATIC ECOSYSTEMS. ISSN 1961-9502, JUL 9 2020, no. 421. SEPULVEDA, A.J. - NELSON, N.M. - JERDE, C.L. - LUIKART, G. Are Environmental DNA Methods Ready for Aquatic Invasive Species Management?. In TRENDS IN ECOLOGY & EVOLUTION. ISSN 0169-5347, AUG 2020, vol. 35, no. 8, p. 668-678. MIYA, M. - GOTOH, R.O. - SADO, T. MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples. In FISHERIES SCIENCE. ISSN 0919-9268, NOV 2020, vol. 86, no. 6, p. 939-970. JIANG, K.W. - ZHANG, R. - ZHANG, Z.F. - PAN, B. - TIAN, B. DNA barcoding and molecular phylogeny of Dumasia (Fabaceae: Phaseoleae) reveals a cryptic lineage. In PLANT DIVERSITY. ISSN 2096-2703, OCT 2020, vol. 42, no. 5, p. 376-385. ANTICH, A. - PALACIN, C. - CEBRIAN, E. - GOLO, R. - WANGENSTEEN, O.S. - TURON, X. Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?. In MOLECULAR ECOLOGY. ISSN 0962-1083, JUL 2021, vol. 30, no. 13, SI, p. 3175-3188. COMPSON, Z.G. - MCCLENAGHAN, B. - SINGER, G.A.C. - FAHNER, N.A. - HAJIBABAEI, M. Metabarcoding From Microbes to Mammals: Comprehensive Bioassessment on a Global Scale. In FRONTIERS IN ECOLOGY AND EVOLUTION. ISSN 2296-701X, NOV 30 2020, vol. 8. UCHIDA, Noriko - KUBOTA, Kengo - AITA, Shunsuke - KAZAMA, So. Time-series transition of the community structure of aquatic insects at middle domain of Natori river basin in Miyagi Prefecture as revealed by eDNA metabarcoding analysis. In Ecology and Civil Engineering. ISSN 13443755, 2020-09-28, 23, 1, pp. 21-36. Dostupné na: https://doi.org/10.3825/ECE.23.21. WANG, Yurong - WEN, Jiating - ZHANG, Jianmin. Review on application of environmental DNA technology in river ecosystems. In Shuili Fadian Xuebao/Journal of Hydroelectric Engineering. ISSN 10031243, 2020-05-25, 39, 5, pp. 90-98. Dostupné na: https://doi.org/10.11660/slfdxb.20200509. SCHUCH, S. - LUDWIG, H. - WESCHE, K. Erfassungsmethoden für ein Insektenmonitoring, Eine Materialsammlung. BfN-Skripten 565, Bundesamt für Naturschutz, Bonn - Bad Godesberg, 2020, 83 pp, ISBN 978-3-89624-326-3. LIN, X.L. - MO, L.D. - BU, W.J. - WANG, X.H. The first comprehensive DNA barcode reference library of Chinese Tanytarsus (Diptera: Chironomidae) for environmental DNA metabarcoding. In DIVERSITY AND DISTRIBUTIONS. ISSN 1366-9516, OCT 2021, vol. 27, no. 10, SI, p. 1932-1941. MARTIN, Daniel - AGUADO, Maria Teresa - FERNANDEZ ALAMO, Maria-Ana - BRITAYEV, Temir Alanovich - BOGGEMANN, Markus - CAPA, Maria - FAULWETTER, Sarah - FUKUDA, Marcelo Veronesi - HELM, Conrad - PETTI, Monica Angelica Varella - RAVARA, Ascensao - TEIXEIRA, Marcos A. L. On the Diversity of Phyllodocida (Annelida: Errantia), with a Focus on Glyceridae, Goniadidae, Nephtyidae, Polynoidae, Sphaerodoridae, Syllidae, and the Holoplanktonic Families. In DIVERSITY-BASEL. MAR 2021, vol. 13, no. 3. Available at: https://doi.org/10.3390/d13030131. BOWERS, Holly A. - POCHON, Xavier - VON AMMON, Ulla - GEMMELL, Neil - STANTON, Jo-Ann L. - JEUNEN, Gert-Jan - SHERMAN, Craig D. H. - ZAIKO, Anastasija. Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance. In WATER. APR 2021, vol. 13, no. 8. Available at: https://doi.org/10.3390/w13081113. AYLAGAS, Eva - ATALAH, Javier - SANCHEZ-JEREZ, Pablo - PEARMAN, John K. - CASADO, Nuria - ASENSI, Jorge - TOLEDO-GUEDES, Kilian - CARVALHO, Susana. A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, AUG 2021, vol. 21, no. 6, p. 1889-1903. Available at: https://doi.org/10.1111/1755-0998.13395. NUNES, M. - LEMLEY, D. A. - MATCHER, G. F. - ADAMS, J. B. The influence of estuary eutrophication on the benthic diatom community: a molecular approach. In AFRICAN JOURNAL OF MARINE SCIENCE. ISSN 1814-232X, APR 3 2021, vol. 43, no. 2, p. 171-186. Available at: https://doi.org/10.2989/1814232X.2021.1897039. LIN, Xiao-Long - JIANG, Kun - LIU, Wen-Bin - LIU, Wei - BU, Wen-Jun - WANG, Xin-Hua - MO, Lidong. Toward a global DNA barcode reference library of the intolerant nonbiting midge genus Rheocricotopus Brundin, 1956. In ECOLOGY AND EVOLUTION. ISSN 2045-7758, SEP 2021, vol. 11, no. 17, p. 12161-12172. Available at: https://doi.org/10.1002/ece3.7979. ROBINSON, C., V - BAIRD, D. J. - WRIGHT, M. T. G. - PORTER, T. M. - HARTWIG, K. - HENDRIKS, E. - MACLEAN, L. - MALLINSON, R. - MONK, W. A. - PAQUETTE, C. - HAJIBABAEI, M. Combining DNA and people power for healthy rivers: Implementing the STREAM community-based approach for global freshwater monitoring. In PERSPECTIVES IN ECOLOGY AND CONSERVATION. ISSN 2530-0644, JUL-SEP 2021, vol. 19, no. 3, p. 279-285. Available at: https://doi.org/10.1016/j.pecon.2021.03.001. CREEDY, Thomas J. - ANDUJAR, Carmelo - MERAMVELIOTAKIS, Emmanouil - NOGUERALES, Victor - OVERCAST, Isaac - PAPADOPOULOU, Anna - MORLON, Helene - VOGLER, Alfried P. - EMERSON, Brent C. - ARRIBAS, Paula. Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation. In MOLECULAR ECOLOGY RESOURCES. ISSN 1755-098X, APR 2022, vol. 22, no. 3, p. 847-861. Available at: https://doi.org/10.1111/1755-0998.13502. JAZDZEWSKA, Anna Maria - TANDBERG, Anne Helene S. - HORTON, Tammy - BRIX, Saskia. Global gap-analysis of amphipod barcode library. In PEERJ. ISSN 2167-8359, NOV 4 2021, vol. 9. Available at: https://doi.org/10.7717/peerj.12352. TRUJILLO-GONZÁLEZ, Alejandro - VILLACORTA-RATH, Cecilia - WHITE, Nicole E. - FURLAN, Elise M. - SYKES, Mark - GROSSEL, Geoff - DIVI, Uday K. - GLEESON, Dianne. Considerations for future environmental DNA accreditation and proficiency testing schemes. In Environmental DNA, 2021-11-01, 3, 6, pp. 1049-1058. Dostupné na: https://doi.org/10.1002/edn3.243. HE, Xiaoping - SUTHERLAND, Terri F. - ABBOTT, Cathryn L. Improved efficiency in eDNA metabarcoding of benthic metazoans by sieving sediments prior to DNA extraction. In Environmental DNA, 2021-07-01, 3, 4, pp. 716-726. Dostupné na: https://doi.org/10.1002/edn3.172. MINAMOTO, Toshifumi - MIYA, Masaki - SADO, Tetsuya - SEINO, Satoquo - DOI, Hideyuki - KONDOH, Michio - NAKAMURA, Keigo - TAKAHARA, Teruhiko - YAMAMOTO, Satoshi - YAMANAKA, Hiroki - ARAKI, Hitoshi - IWASAKI, Wataru - KASAI, Akihide - MASUDA, Reiji - UCHII, Kimiko. An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols. In Environmental DNA, 2021-01-01, 3, 1, pp. 8-13. Dostupné na: https://doi.org/10.1002/edn3.121. USANOVIC, Lejla - DESTANOVIC, Dalila - LASIC, Lejla - KURTOVIC, Jasna Hanjalic - COSTA, Filipe O. - STROIL, Belma Kalamujic. Status of the BOLD reference library of DNA barcodes of caddisflies (Insecta: Trichoptera) from the Western Balkans. In PERIODICUM BIOLOGORUM. ISSN 0031-5362, DEC 2022, vol. 124, no. 3-4, p. 107-114. Available at: https://doi.org/10.18054/pb.v124i3-4.24754. MENDOZA-RAMIREZ, Bryant H. - PAIZ-MEDINA, Lucia - SALVATIERRA-SUAREZ, Thelma - HERNANDEZ, Nelvia - HUETE-PEREZ, Jorge A. A survey of aquatic macroinvertebrates in a river from the dry corridor of Nicaragua using biological indices and DNA barcoding. In ECOLOGY AND EVOLUTION. ISSN 2045-7758, NOV 2022, vol. 12, no. 11. Available at: https://doi.org/10.1002/ece3.9487. BIKASHVILI, Ani - KACHLISHVILI, Nino - JAPOSHVILI, Bella - MUMLADZE, Levan. Species diversity and DNA barcode library of freshwater Molluscs of South Caucasus. In BIODIVERSITY DATA JOURNAL. ISSN 1314-2836, SEP 13 2022, vol. 10. Available at: https://doi.org/10.3897/BDJ.10.e84887. YAO, Meng - ZHANG, Shan - LU, Qi - CHEN, Xiaoyu - ZHANG, Si-Yu - KONG, Yueqiao - ZHAO, Jindong. Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward. In MOLECULAR ECOLOGY. ISSN 0962-1083, OCT 2022, vol. 31, no. 20, p. 5132-5164. Available at: https://doi.org/10.1111/mec.16659. CAMPOS, Camila Aida - TONIN, Alan M. - KENNARD, Mark J. - GONCALVES JUNIOR, Jose Francisco. Setting thresholds of ecosystem structure and function to protect streams of the Brazilian savanna. In FRONTIERS IN ENVIRONMENTAL SCIENCE. AUG 31 2022, vol. 10. Available at: https://doi.org/10.3389/fenvs.2022.867905. MOREIRA, Paula Dias - DUMAS, Leandro Lourenco - ROZO, Maria Paula - DESIDERIO, Gleison Robson - TAKIYA, Daniela Maeda. Integrative taxonomy supports two new species of Chimarra Stephens, 1829 from Brazil (Trichoptera: Philopotamidae). In ARTHROPOD SYSTEMATICS & PHYLOGENY. ISSN 1863-7221, MAY 30 2022, vol. 80, p. 169-185. Available at: https://doi.org/10.3897/asp.80.e76559. CARVALHO, Daniel Cardoso. Ichthyoplankton DNA metabarcoding: Challenges and perspectives. In MOLECULAR ECOLOGY. ISSN 0962-1083, MAR 2022, vol. 31, no. 6, p. 1612-1614. Available at: https://doi.org/10.1111/mec.16387. XIONG, Fan - SHU, Lu - ZENG, Honghui - GAN, Xiaoni - HE, Shunping - PENG, Zuogang. Methodology for fish biodiversity monitoring with environmental DNA metabarcoding: The primers, databases and bioinformatic pipelines. In WATER BIOLOGY AND SECURITY. FEB 2022, vol. 1, no. 1. Available at: https://doi.org/10.1016/j.watbs.2022.100007. SACCO, Mattia - GUZIK, Michelle T. - VAN DER HEYDE, Mieke - NEVILL, Paul - COOPER, Steven J. B. - AUSTIN, Andrew D. - COATES, Peterson J. - ALLENTOFT, Morten E. - WHITE, Nicole E. eDNA in subterranean ecosystems: Applications, technical aspects, and future prospects. In SCIENCE OF THE TOTAL ENVIRONMENT. ISSN 0048-9697, MAY 10 2022, vol. 820. Available at: https://doi.org/10.1016/j.scitotenv.2022.153223. WAN, Linglin - CHEN, Zhifan - GUO, Jia - TONG, Lihui - REN, Lijuan - HAN, Boping - WU, Qinglong. Principle and application of co-occurrence networks for freshwater ecosystem assessment. In Hupo Kexue/Journal of Lake Sciences, 2022-11-06, 34, 6, pp. 1765-1787. ISSN 10035427. Dostupné na: https://doi.org/10.18307/2022.0601. Category ADMA - Scientific papers in foreign impacted journals registered in Web of Sciences or Scopus Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2018 Registered in WOS Registered in SCOPUS DOI 10.1016/bs.aecr.2018.01.001 
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File name Access Size Downloaded Type License Why We Need Sustainable Networks Bridging Countries.pdf Neprístupný/archív 1.1 MB 1 Publisher's version rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore N rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2018 2017 4.912 Q1 2.524 Q1
Number of the records: 1