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Comparison of methods for identification of microbial communities in book collections: Culture-dependent (sequencing and MALDI-TOF MS) and culture-independent (Illumina MiSeq)
Title Comparison of methods for identification of microbial communities in book collections: Culture-dependent (sequencing and MALDI-TOF MS) and culture-independent (Illumina MiSeq) Author Kraková Lucia SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Co-authors Šoltýs K. Otlewska A. Pietrzak K. Purkrtová S. Savická D. Puškárová Andrea SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Bučková Mária SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Szemes Tomáš Budiš J. Demnerova K. Gutarowska B. Pangallo Domenico SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Source document International Biodeterioration & Biodegradation. Vol. 131 (2018), p. 51-59 Language eng - English Document kind rozpis článkov z periodík (rbx) Citations TEASDALE, M.D. - FIDDYMENT, S. - VNOUCEK, J. - MATTIANGELI, V. - SPELLER, C. - BINOIS, A. - CARVER, M. - DAND, C. - NEWFIELD, T.P. - WEBB, C.C. - BRADLEY, D.G. - COLLINS, M.J. In ROYAL SOCIETY OPEN SCIENCE. OCT 2017, vol. 4, no. 10. BORREGO, S. - GUIAMET, P. - VIVAR, I. - BATTISTONI, P. FUNGI INVOLVED IN BIODETERIORATION OF DOCUMENTS IN PAPER AND EFFECT ON SUBSTRATE. In ACTA MICROSCOPICA. 2018, vol. 27, no. 1, p. 37-44. PERITO, B. - CAVALIERI, D. Innovative metagenomic approaches for detection of microbial communities involved in biodeteriorattion of cultural heritage. In FLORENCE HERI-TECH - THE FUTURE OF HERITAGE SCIENCE AND TECHNOLOGIES. 2018, vol. 364. DISSANAYAKE, A.J. - PURAHONG, W. - WUBET, T. - HYDE, K.D. - ZHANG, W. - XU, H.Y. - ZHANG, G.J. - FU, C.Y. - LIU, M. - XING, Q.K. - LI, X.H. - YAN, J.Y. Direct comparison of culture-dependent and culture-independent molecular approaches reveal the diversity of fungal endophytic communities in stems of grapevine (Vitis vinifera). In FUNGAL DIVERSITY. MAY 2018, vol. 90, no. 1, p. 85-107. KARAKASIDOU, K. - NIKOLOULI, K. - AMOUTZIAS, G.D. - POURNOU, A. - MANASSIS, C. - TSIAMIS, G. - MOSSIALOS, D. Microbial diversity in biodeteriorated Greek historical documents dating back to the 19th and 20th century: A case study. In MICROBIOLOGYOPEN. OCT 2018, vol. 7, no. 5. GREEN, E.J. - SPELLER, C.F. Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles. In GENES. JUL 2017, vol. 8, no. 7. GRABEK-LEJKO, D. - TEKIELA, A. - KASPRZYK, I. Risk of of biodeterioration of cultural heritage objects, stored in the historical and modern repositories in the Regional Museum in Rzeszow(Poland). A case study. In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. SEP 2017, vol. 123, p. 46-55. PINHEIRO, A.C. - SEQUEIRA, S.O. - MACEDO, M.F. Fungi in archives, libraries, and museums: a review on paper conservation and human health. In CRITICAL REVIEWS IN MICROBIOLOGY. ISSN 1040-841X, NOV 2 2019, vol. 45, no. 5-6, p. 686-700. DE CARVALHO, H.P. - SEQUEIRA, S.O. - PINHO, D. - TROVAO, J. - DA COSTA, R.M.F. - EGAS, C. - MACEDO, M.F. - PORTUGAL, A. Combining an innovative non-invasive sampling method and high-throughput sequencing to characterize fungal communities on a canvas painting. In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. ISSN 0964-8305, NOV 2019, vol. 145. MARVASI, M. - CAVALIERI, D. - MASTROMEI, G. - CASACCIA, A. - PERITO, B. Omics technologies for an in-depth investigation of biodeterioration of cultural heritage. In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. ISSN 0964-8305, OCT 2019, vol. 144. SEQUEIRA, S.O. - DE CARVALHO, H.P. - MESQUITA, N. - PORTUGAL, A. - MACEDO, M.F. Fungal stains on paper: is what you see what you get?. In CONSERVAR PATRIMONIO. ISSN 1646-043X, SEP 2019, no. 32, p. 18-27. TROVAO, J. - PORTUGAL, A. - SOARES, F. - PAIVA, D.S. - MESQUITA, N. - COELHO, C. - PINHEIRO, A.C. - CATARINO, L. - GIL, F. - TIAGO, I. Fungal diversity and distribution across distinct biodeterioration phenomena in limestone walls of the old cathedral of Coimbra, UNESCO World Heritage Site. In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. ISSN 0964-8305, AUG 2019, vol. 142, p. 91-102. FOUDA, A. - ABDEL-MAKSOUD, G. - ABDEL-RAHMAN, M.A. - SALEM, S.S. - HASSAN, S.E. - EL-SADANY, M.A.H. Eco-friendly approach utilizing green synthesized nanoparticles for paper conservation against microbes involved in biodeterioration of archaeological manuscript. In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. ISSN 0964-8305, AUG 2019, vol. 142, p. 160-169. HAMZAH, Aseel Mohammed. Molecular detection of Lysinibacillus fusiformis isolated from milk samples of cow in Iraq. In Journal of Global Pharma Technology, 2019-01-01, 11, 5, pp. 280-285. WU, Bing - HUSSAIN, Muzammil - ZHANG, Weiwei - STADLER, Marc - LIU, Xingzhong - XIANG, Meichun. Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi. In Mycology. ISSN 21501203, 2019-07-03, 10, 3, pp. 127-140. ZHANG, J.W. - PLOWMAN, J.E. - TIAN, B. - CLERENS, S. - ON, S.L.W. An improved method for MALDI-TOF analysis of wine-associated yeasts. In JOURNAL OF MICROBIOLOGICAL METHODS. ISSN 0167-7012, MAY 2020, vol. 172, 105904 RYBITWA, D. - WAWRZYK, A. - RAHNAMA, M. Application of a Medical Diode Laser (810 nm) for Disinfecting Small Microbiologically Contaminated Spots on Degraded Collagenous Materials for Improved Biosafety in Objects of Exceptional Historical Value From the Auschwitz-Birkenau State Museum and Protection of Human Health. In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, DEC 18 2020, vol. 11. HUPFAUF, S. - ETEMADI, M. - JUAREZ, M.F.D. - GOMEZ-BRANDON, M. - INSAM, H. - PODMIRSEG, S.M. CoMA - an intuitive and user-friendly pipeline for amplicon-sequencing data analysis. In PLOS ONE. ISSN 1932-6203, DEC 2 2020, vol. 15, no. 12, e0243241 PINAR, G. - SCLOCCHI, M.C. - PINZARI, F. - COLAIZZI, P. - GRAF, A. - SEBASTIANI, M.L. - STERFLINGER, K. The Microbiome of Leonardo da Vinci's Drawings: A Bio-Archive of Their History. In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, NOV 20 2020, vol. 11, 593401 PINHEIRO, A.C. - SEQUEIRA, S.O. - POUSADA, R. Communicating science: The making of a comics poster on biodeterioration. In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. ISSN 0964-8305, NOV 2020, vol. 155. RYBITWA, D. - WAWRZYK, A. - WILCZYNSKI, S. - LOBACZ, M. Irradiation with medical diode laser as a new method of spot-elimination of microorganisms to preserve historical cellulosic objects and human health. In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. ISSN 0964-8305, OCT 2020, vol. 154, 105055 ANNA, W. - DOROTA, R. - MANSUR, R. - SLAWOMIR, W. Microorganisms colonising historical cardboard objects from the Auschwitz-Birkenau State Museum in Oswiecim, Poland and their disinfection with vaporised hydrogen peroxide (VHP). In INTERNATIONAL BIODETERIORATION & BIODEGRADATION. ISSN 0964-8305, AUG 2020, vol. 152, 104997 ROSADO, T. - DIAS, L. - LANCA, M. - NOGUEIRA, C. - SANTOS, R. - MARTINS, M.R. - CANDEIAS, A. - MIRAO, J. - CALDEIRA, A.T. Assessment of microbiota present on a Portuguese historical stone convent using high-throughput sequencing approaches. In MICROBIOLOGYOPEN. ISSN 2045-8827, JUN 2020, vol. 9, no. 6, e1030 JO, H. - TAGELE, S.B. - PHAM, H.Q. - KIM, M.C. - CHOI, S.D. - KIM, M.J. - PARK, Y.J. - IBAL, J.C. - PARK, G.S. - SHIN, J.H. Response of Soil Bacterial Community and Pepper Plant Growth to Application of Bacillus thuringiensis KNU-07. In AGRONOMY-BASEL. APR 2020, vol. 10, no. 4, 551 ZHANG, Ying - KONG, Qiangqiang - WU, Dingmeng - LI, Angui - GAO, Ran. Characteristics of fungal aerosol concentration and particle size distribution in a university library in Xi'an. In Xi'an Jianzhu Keji Daxue Xuebao/Journal of Xi'an University of Architecture and Technology, 2020-04-28, 52, 2, pp. ISSN 10067930. Dostupné na: https://doi.org/10.15986/j.1006-7930.2020.02.020. BLASZCZYK, L. - SALAMON, S. - MIKOLAJCZAK, K. Fungi Inhabiting the Wheat Endosphere. In PATHOGENS. OCT 2021, vol. 10, no. 10. ROMERO, M.S. - GIUDICESSI, L.S. - VITALE, G.R. Is the fungus Aspergillus a threat to cultural heritage?. In JOURNAL OF CULTURAL HERITAGE. ISSN 1296-2074, SEP-OCT 2021, vol. 51, p. 107-124. KIM, E. - YANG, S.M. - KIM, H.Y. Analysis of Cultivable Microbial Community during Kimchi Fermentation Using MALDI-TOF MS. In FOODS. MAY 2021, vol. 10, no. 5. KIM, E. - CHO, E.J. - YANG, S.M. - KIM, M.J. - KIM, H.Y. Novel approaches for the identification of microbial communities in kimchi: MALDI-TOF MS analysis and high-throughput sequencing. In FOOD MICROBIOLOGY. ISSN 0740-0020, APR 2021, vol. 94. RYBITWA, D. - WAWRZYK, A. - RAHNAMA, M. 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Novel eco-friendly [1,2,4]triazolo[3,4-ia/i]isoquinoline chalcone derivatives efficiency against fungal deterioration of ancient Egyptian mummy cartonnage, Egypt. In ARCHIVES OF MICROBIOLOGY. ISSN 0302-8933, FEB 2023, vol. 205, no. 2. Dostupné na: https://doi.org/10.1007/s00203-022-03395-7. PAIVA, D.S. - FERNANDES, L. - PEREIRA, E. - TROVAO, J. - MESQUITA, N. - TIAGO, I. - PORTUGAL, A. Exploring Differences in Culturable Fungal Diversity Using Standard Freezing Incubation-A Case Study in the Limestones of Lemos Pantheon (Portugal). In JOURNAL OF FUNGI. APR 2023, vol. 9, no. 4. Dostupné na: https://doi.org/10.3390/jof9040501. CREYDT, M. - FISCHER, M. Artefact Profiling: Panomics Approaches for Understanding the Materiality of Written Artefacts. In MOLECULES. JUN 2023, vol. 28, no. 12. Dostupné na: https://doi.org/10.3390/molecules28124872. WANG, X. - WU, G.Q. - HAN, S. - YANG, J.J. - HE, X.W. - LI, H.F. Differentiation and Identification of Endophytic Bacteria from Populus Based on Mass Fingerprints and Gene Sequences. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. ISSN 1661-6596, SEP 2023, vol. 24, no. 17. Dostupné na: https://doi.org/10.3390/ijms241713449. SENJALIYA, D.P. - GEORRGE, J.J. Comparative study on biochemical and molecular identification approaches of iLactobacillus /ispecies. In INTERNATIONAL FOOD RESEARCH JOURNAL. ISSN 1985-4668, OCT 2023, vol. 30, no. 5, p. 1105-1124. Dostupné na: https://doi.org/10.47836/ifrj.30.5.03. MANSOUR, M.M.A. - SALEM, M.Z.M. Poultices as biofilms of titanium dioxide nanoparticles/carboxymethyl cellulose/Phytagel for cleaning of infected cotton paper by iAspergillus sydowii/i and iNevskia terrae/i. In ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. ISSN 0944-1344, NOV 2023, vol. 30, no. 53, p. 114625-114645. Dostupné na: https://doi.org/10.1007/s11356-023-30353-7. CIRONE, M. - FIGOLI, A. - GALIANO, F. - LA RUSSA, M.F. - MACCHIA, A. - MANCUSO, R. - RICCA, M. - ROVELLA, N. - TAVERNITI, M. - RUFFOLO, S.A. Innovative Methodologies for the Conservation of Cultural Heritage against Biodeterioration: A Review. In COATINGS. DEC 2023, vol. 13, no. 12. Dostupné na: https://doi.org/10.3390/coatings13121986. Category ADCA - Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2018 Registered in WOS Registered in SCOPUS Registered in CCC DOI 10.1016/j.ibiod.2017.02.015 
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