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Normal mode analysis as a routine part of a structural investigation
Title Normal mode analysis as a routine part of a structural investigation Author Bauer Jacob SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Co-authors Pavlović Jelena SAVMOBIO - Ústav molekulárnej biológie SAV Bauerová Vladena SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Source document Molecules. Vol. 24, no. 15 (2019), p. 3293 Language eng - English Document kind rozpis článkov z periodík (rbx) Citations SUPO-ESCALANTE , R.R. - MEDICO, A. - GUSHIKEN, E. - OLIVOS-RAMIREZ, G.E. - QUISPE, Y. - TORRES, F. - ZAMUDIO, M. - ANTIPARRA, R. - AMZEL, L.M. - GILMAN, R.H. - SHEEN, P. - ZIMIC, M. Prediction of Mycobacterium tuberculosis pyrazinamidase function based on structural stability, physicochemical and geometrical descriptors. In PLOS ONE. ISSN 1932-6203, JUL 31 2020, vol. 15, no. 7. PATRA, P. - BHATTACHARYA, M. - SHARMA, A.R. - GHOSH, P. - SHARMA, G. - PATRA, B.C. - MALLICK, B. - LEE, S.S. - CHAKRABORTY, C. Identification and Design of a Next-Generation Multi Epitopes Bases Peptide Vaccine Candidate Against Prostate Cancer: An In Silico Approach. In CELL BIOCHEMISTRY AND BIOPHYSICS. ISSN 1085-9195, DEC 2020, vol. 78, no. 4, SI, p. 495-509. SURPETA, B. - SEQUEIROS-BORJA, C.E. - BREZOVSKY, J. Dynamics, a Powerful Component of Current and Future in Silico Approaches for Protein Design and Engineering. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. APR 2020, vol. 21, no. 8. CUEVAS-ZUVIRIA, B. - MINGUEZ-TORAL, M. - DIAZ-PERALES, A. - GARRIDO-ARANDIA, M. - PACIOS, L.F. Dynamic plasticity of the lipid antigen-binding site of CD1d is crucially favoured by acidic pH and helper proteins. In SCIENTIFIC REPORTS. ISSN 2045-2322, MAR 31 2020, vol. 10, no. 1. RIBEIRO BUENO, Joao Gabriel - BORELLI, Guilherme - RIBEIRO CORREA, Thamy Livia - FIAMENGHI, Mateus Bernabe - JOS, Juliana - DE CARVALHO, Murilo - DE OLIVEIRA, Leandro Cristante - PEREIRA, Goncalo A. G. - DOS SANTOS, Leandro Vieira. Novel xylose transporter Cs4130 expands the sugar uptake repertoire in recombinantSaccharomyces cerevisiaestrains at high xylose concentrations. In BIOTECHNOLOGY FOR BIOFUELS, 2020, vol. 13, no. 1, pp. Dostupné na: https://doi.org/10.1186/s13068-020-01782-0. CUEVAS-ZUVIRÍA, Bruno - MÍNGUEZ-TORAL, Marina - DÍAZ-PERALES, Araceli - GARRIDO-ARANDIA, María - PACIOS, Luis F. Dynamic plasticity of the lipid antigen-binding site of CD1d is crucially favoured by acidic pH and helper proteins. In Scientific Reports, 2020-12-01, 10, 1, pp. Dostupné na: https://doi.org/10.1038/s41598-020-62833-y. PATRA, Prasanta - GHOSH, Pratik - PATRA, Bidhan Chandra - BHATTACHARYA, Manojit. Biocomputational Analysis and In Silico Characterization of an Angiogenic Protein (RNase5) in Zebrafish (Danio rerio). In International Journal of Peptide Research and Therapeutics, 2020-12-01, 26, 4, pp. 1687-1697. ISSN 15733149. Dostupné na: https://doi.org/10.1007/s10989-019-09978-1. BHATTACHARYA, Manojit - SHARMA, Ashish Ranjan - PATRA, Prasanta - GHOSH, Pratik - SHARMA, Garima - PATRA, Bidhan Chandra - SAHA, Rudra P. - LEE, Sang Soo - CHAKRABORTY, Chiranjib. A SARS-CoV-2 vaccine candidate: In-silico cloning and validation. In Informatics in Medicine Unlocked, 2020-01-01, 20, pp. ISSN 23529148. Dostupné na: https://doi.org/10.1016/j.imu.2020.100394. CARUGO, O. Decline of protein structure rigidity with interatomic distance. In BMC BIOINFORMATICS. ISSN 1471-2105, SEP 28 2021, vol. 22, no. 1. KHAIRALLAH, A. - ROSS, C.J. - BISHOP, O.T. GTP Cyclohydrolase I as a Potential Drug Target: New Insights into Its Allosteric Modulation via Normal Mode Analysis. In JOURNAL OF CHEMICAL INFORMATION AND MODELING. ISSN 1549-9596, SEP 27 2021, vol. 61, no. 9, p. 4701-4719. BHEEMIREDDY, S. - SANDHYA, S. - SRINIVASAN, N. Comparative Analysis of Structural and Dynamical Features of Ribosome Upon Association With mRNA Reveals Potential Role of Ribosomal Proteins. In FRONTIERS IN MOLECULAR BIOSCIENCES. AUG 2 2021, vol. 8. SEQUEIROS-BORJA, C.E. - SURPETA, B. - BREZOVSKY, J. Recent advances in user-friendly computational tools to engineer protein function. In BRIEFINGS IN BIOINFORMATICS. ISSN 1467-5463, MAY 2021, vol. 22, no. 3. SULAIMON, L.A. - ADISA, R.A. - SAMUEL, T.A. - JOEL, I.Y. - AYANKOJO, A.G. - ABDULKAREEM, F.B. - OLANIYI, T.O. Molecular mechanism of mitoquinol mesylate in mitigating the progression of hepatocellular carcinoma-in silico and in vivo studies. In JOURNAL OF CELLULAR BIOCHEMISTRY. ISSN 0730-2312, SEP 2021, vol. 122, no. 9, p. 1157-1172. MALIK, R.M. - FAZAL, S. - KAMAL, M.A. Computational Analysis of Domains Vulnerable to HPV-16 E6 Oncoprotein and Corresponding Hot Spot Residues. In PROTEIN AND PEPTIDE LETTERS. ISSN 0929-8665, APR 2021, vol. 28, no. 4, p. 414-425. AFRASIABI, F. - DEHGHANPOOR, R. - HASPEL, N. Integrating Rigidity Analysis into the Exploration of Protein Conformational Pathways Using RRT* and MC. In MOLECULES. 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TANG, C. - WANG, Y.D. - CHENG, J. - CHANG, C. - HU, J. - LU, J.H. Probing terahertz dynamics of multidomain protein in cell-like confinement. In SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY. ISSN 1386-1425, JUL 5 2022, vol. 275. LAUGHLIN, T.G. - DEEP, A. - PRICHARD, A.M. - SEITZ, C. - GU, Y.J. - ENUSTUN, E. - SUSLOV, S. - KHANNA, K. - BIRKHOLZ, E.A. - ARMBRUSTER, E. - MCCAMMON, J.A. - AMARO, R.E. - POGLIANO, J. - CORBETT, K.D. - VILLA, E. Architecture and self-assembly of the jumbo bacteriophage nuclear shell. In NATURE. ISSN 0028-0836, AUG 11 2022, vol. 608, no. 7922, p. 429-+. UZOETO, H.O. - COSMAS, S. - AJIMA, J.N. - ARAZU, A.V. - DIDIUGWU, C.M. - EKPO, D.E. - IBIANG, G.O. - DUROJAYE, O.A. Computer-aided molecular modeling and structural analysis of the human centromere protein-HIKM complex. In BENI-SUEF UNIVERSITY JOURNAL OF BASIC AND APPLIED SCIENCES. AUG 19 2022, vol. 11, no. 1. Category ADCA - Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2019 Registered in WOS Registered in SCOPUS Registered in CCC DOI 10.3390/molecules24183293 
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File name Access Size Downloaded Type License Normal mode analysis as a routine part of a structural investigation.pdf available 2.1 MB 0 Publisher's version rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2019 2018 3.060 Q2 0.757 Q1
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