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Comparative proteomic analysis of early-stage soybean seedlings responses to flooding by using gel and gel-free techniques
Title Comparative proteomic analysis of early-stage soybean seedlings responses to flooding by using gel and gel-free techniques Author Nanjo Y. Co-authors Škultéty Ľudovít 1966 SAVMOMEC ; SAVVIR - Molekulárno-medicínske centrum RID RID ORCID Ashraf Y. Komatsu S. Source document Journal of Proteome Research. Vol. 6, no. 8 (2010), p. 3989 - 4002 Language eng - English Document kind rozpis článkov z periodík (rbx) Citations Lee DG (Lee, Dong-Gi)1,2, Houston NL (Houston, Norma L.)1,2, Stevenson SE (Stevenson, Severin E.)1,2, Ladics GS (Ladics, Gregory S.)3, McClain S (McClain, Scott)4, Privalle L (Privalle, Laura)5, Thelen JJ (Thelen, Jay J.) Mass spectrometry analysis of soybean seed proteins: optimization of gel-free quantitative workflow ANALYTICAL METHODS Volume: 2 Issue: 10 Pages: 1577-1583 Published: OCT 2010 Kim, HT (Kim, Hyun Tae)1; Choi, UK (Choi, Ung-Kyu)1,2; Ryu, HS (Ryu, Hyun Su)1; Lee, SJ (Lee, Su Jin)1; Kwon, OS (Kwon, Oh-Shin)1 Mobilization of storage proteins in soybean seed (Glycine max L.) during germination and seedling growth BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS Volume: 1814 Issue: 9 Pages: 1178-1187 DOI: 10.1016/j.bbapap.2011.05.004 Published: SEP 2011 Shi, SS (Shi, Shanshan)1,2; Chen, W (Chen, Wei)3; Sun, WN (Sun, Weining)1,2 Comparative proteomic analysis of the Arabidopsis cbl1 mutant in response to salt stress PROTEOMICS Volume: 11 Issue: 24 Pages: 4712-4725 DOI: 10.1002/pmic.201100042 Published: DEC 2011 Li, B (Li, Bin)1; Takahashi, D (Takahashi, Daisuke)2; Kawamura, Y (Kawamura, Yukio)1,2; Uemura, M (Uemura, Matsuo)1,2 Comparison of Plasma Membrane Proteomic Changes of Arabidopsis Suspension-Cultured Cells (T87 Line) after Cold and ABA Treatment in Association with Freezing Tolerance Development PLANT AND CELL PHYSIOLOGY Volume: 53 Issue: 3 Pages: 543-554 DOI: 10.1093/pcp/pcs010 Published: MAR 2012 Yanagawa, Y. Understanding of Ub-proteasome pathway using proteomic approach in plants Seikagaku 84 (6) , pp. 448-454 , 2012 Hakeem, K.R., Chandna, R., Ahmad, P., Iqbal, M., Ozturk, M. Relevance of proteomic investigations in plant abiotic stress physiology OMICS A Journal of Integrative Biology 16 (11) , pp. 621-635 , 2012 Mesquita, R.O., Soares, E.A., de Barros, E.G., Loureiro, M.E. Method optimization for proteomic analysis of soybean leaf: Improvements in identification of new and low-abundance proteins Genetics and Molecular Biology 35 (SUPPL.1) , pp. 353-361 , 2012 Zhao, Q (Zhao, Qi)[ 1,2 ] ; Zhang, H (Zhang, Heng)[ 1,2 ] ; Wang, T (Wang, Tai)[ 3 ] ; Chen, SX (Chen, Sixue)[ 4 ] ; Dai, SJ (Dai, Shaojun)[ 1,2 ] Proteomics-based investigation of salt-responsive mechanisms in plant roots JOURNAL OF PROTEOMICS Volume: 82 Pages: 230-253 DOI: 10.1016/j.jprot.2013.01.024 Published: APR 26 2013 Barkla, B.J., Vera-Estrella, R., Pantoja, O. Progress and challenges for abiotic stress proteomics of crop plants Proteomics 13 (12-13) , pp. 1801-1815 , 2013 Li, Y.a, Zhang, Y.abc, Shi, D.b, Liu, X.a, Qin, J.d, Ge, Q.a, Xu, L.b, Pan, X.e, Li, W.f, Zhu, Y.g, Xu, J.abc Spatial-temporal analysis of zinc homeostasis reveals the response mechanisms to acute zinc deficiency in Sorghum bicolor New Phytologist Volume 200, Issue 4, December 2013, Pages 1102-1115 Tamang, BG (Tamang, Bishal G.)[ 1 ] ; Magliozzi, JO (Magliozzi, Joseph O.)[ 1 ] ; Maroof, MAS (Maroof, M. A. Saghai)[ 1 ] ; Fukao, T Physiological and transcriptomic characterization of submergence and reoxygenation responses in soybean seedlings PLANT CELL AND ENVIRONMENT Volume: 37 Issue: 10 Pages: 2350-2365 Special Issue , 2014 Anwar Hossain, M.a, Hoque, M.A.a, Burritt, D.J.b, Fujita, M.c Proline Protects Plants Against Abiotic Oxidative Stress: Biochemical and Molecular Mechanisms (Book Chapter) Oxidative Damage to Plants: Antioxidant Networks and Signaling March 2014, Pages 477-522 Ghosh, Dipanjana; Xu, Jian Abiotic stress responses in plant roots: a proteomics perspective FRONTIERS IN PLANT SCIENCE Volume: 5 Article Number: 6 Published: JAN 24 2014 Hossain, MA (Hossain, Mohammad Anwar)[ 1 ] ; Hoque, MA (Hoque, Md Anamul)[ 2 ] ; Burritt, DJ (Burritt, David J.)[ 3 ] ; Fujita, M Proline Protects Plants Against Abiotic Oxidative Stress: Biochemical and Molecular Mechanisms Edited by:Ahmad, P OXIDATIVE DAMAGE TO PLANTS: ANTIOXIDANT NETWORKS AND SIGNALING Pages: 477-522, 2014 Hock, Bertold Root Proteomics Edited by: Morte, A; Varma, A ROOT ENGINEERING: BASIC AND APPLIED CONCEPTS Book Series: Soil Biology Volume: 40 Pages: 407-421 Published: 2014 Mustroph, Angelika; Hess, Natalia; Sasidharan, Rashmi Hypoxic Energy Metabolism and PPi as an Alternative Energy Currency Edited by: VanDongen, JT; Licausi, F LOW-OXYGEN STRESS IN PLANTS: OXYGEN SENSING AND ADAPTIVE RESPONSES TO HYPOXIA Book Series: Plant Cell Monographs Volume: 21 Pages: 165-184 Published: 2014 Liu, ZB (Liu, Zhenbin)[ 1 ] ; Li, Y (Li, Yuan)[ 1 ] ; Cao, HW (Cao, Hanwei)[ 1 ] ; Ren, DT Comparative phospho-proteomics analysis of salt-responsive phosphoproteins regulated by the MKK9-MPK6 cascade in Arabidopsis PLANT SCIENCE Volume: 241 Pages: 138-150, 2015 Gismondi, E (Gismondi, E.)[ 1 ] ; Mazzucchelli, G (Mazzucchelli, G.)[ 2 ] ; De Pauw, E (De Pauw, E.)[ 2 ] ; Joaquim-Justo, C (Joaquim-Justo, C.)[ 1 ] ; Thome, JP Gender differences in responses in Gammarus pulex exposed to BDE-47: A gel-free proteomic approach ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY Volume: 122 Pages: 205-213, 2015 Yu, F (Yu, Feng)[ 1 ] ; Han, XS (Han, Xuesong)[ 1 ] ; Geng, CJ (Geng, Cunjuan)[ 1 ] ; Zhao, YX (Zhao, Yanxin)[ 1 ] ; Zhang, ZX (Zhang, Zuxin)[ 1 ] ; Qiu, FZ Comparative proteomic analysis revealing the complex network associated with waterlogging stress in maize (Zea mays L.) seedling root cells PROTEOMICS Volume: 15 Issue: 1 Pages: 135-147, 2015 Gill, S.S.a , Anjum, N.A.b, Gill, R.a, Mahajan, M.a, Tuteja, N. Abiotic stress tolerance and sustainable agriculture: A functional genomics perspective (Book Chapter) Elucidation of Abiotic Stress Signaling in Plants: Functional Genomics Perspectives, Volume 2 1 January 2015, Pages 439-472 WU, Xiaolin - GONG, Fangping - CAO, Di - HU, Xiuli - WANG, Wei. Advances in crop proteomics: PTMs of proteins under abiotic stress. In PROTEOMICS. ISSN 1615-9853, MAR 2016, vol. 16, no. 5, SI, p. 847-865. TYCZEWSKA, Agata - GRACZ, Joanna - KUCZYNSKI, Jakub - TWARDOWSKI, Tomasz. Deciphering the soybean molecular stress response via high-throughput approaches. In ACTA BIOCHIMICA POLONICA. ISSN 0001-527X, 2016, vol. 63, no. 4, p. 631-643. LATEF, Arafat Abdel Hamed Abdel - JAN, Sumaira - ABD-ALLAH, Elsayed Fathi - RASHID, Bushra - JOHN, Riffat - AHMAD, Parvaiz. Soybean under abiotic stress: Proteomic approach. In PLANT-ENVIRONMENT INTERACTION: RESPONSES AND APPROACHES TO MITIGATE STRESS. 2016, p. 28-42. KHAN, P. S. Sha Valli - BASHA, P. Osman - LAKSHMI, G. Vijaya - MUNIRAJA, M. - SERGEANT, K. - HAUSMAN, J. F. Proteomic analysis of food crops under abiotic stresses in the context of climate change. In PLANT-ENVIRONMENT INTERACTION: RESPONSES AND APPROACHES TO MITIGATE STRESS. 2016, p. 43-69. TEWARI, S. - ARORA, N. K. Soybean Production Under Flooding Stress and Its Mitigation Using Plant Growth-Promoting Microbes. In Environmental Stresses in Soybean Production: Soybean Production, 2016-06-15, 2, pp. 23-40. OU, Li-Jun - LIU, Zhou-Bin - ZHANG, Yu-Ping - ZOU, Xue-Xiao. Effects of exogenous Ca2+ on photosynthetic characteristics and fruit quality of pepper under waterlogging stress. In CHILEAN JOURNAL OF AGRICULTURAL RESEARCH. ISSN 0718-5839, 2017, vol. 77, no. 2, pp. 126-133. ZHANG, Ji-Yu - HUANG, Sheng-Nan - CHEN, Yue-Hong - WANG, Gang - GUO, Zhong-Ren. Identification and characterization of two waterlogging responsive alcohol dehydrogenase genes (AdADH1 and AdADH2) in Actinidia deliciosa. In MOLECULAR BREEDING. ISSN 1380-3743, 2017, vol. 37, no. 4, pp. JACOBY, Richard P. - HARVEY MILLAR, A. - TAYLOR, Nicolas L. Mitochondrial biochemistry: Stress responses and roles in stress alleviation. In Annual Plant Reviews, Volume 50: Plant Mitochondria, Second Edition, 2017-01-01, pp. 227-268. DO NASCIMENTO, Sidney Vasconcelos - MAGALHAES, Marcelo Murad - CUNHA, Roberto Lisboa - DE OLIVEIRA COSTA, Paulo Henrique - DE OLIVEIRA ALVES, Ronnie Cley - DE OLIVEIRA, Guilherme Correa - DA SILVA VALADARES, Rafael Borges. Differential accumulation of proteins in oil palms affected by fatal yellowing disease. In PLOS ONE. ISSN 1932-6203, 2018, vol. 13, no. 4, pp. KUMAR, Vinay - KHARE, Tushar - SHARMA, Mansi - WANI, Shabir H. Engineering Crops for the Future: A Phosphoproteomics Approach. In CURRENT PROTEIN & PEPTIDE SCIENCE. ISSN 1389-2037, 2018, vol. 19, no. 4, pp. 413-426. PAN, Dezhuo - WANG, Lingxia - TAN, Fanglin - LU, Si - LV, Xiaojie - ZAYNAB, Madiha - CHENG, Chi-Lien - ABUBAKAR, Yakubu Saddeeq - CHEN, Shipin - CHEN, Wei. Phosphoproteomics unveils stable energy supply as key to flooding tolerance in Kandelia candel. In JOURNAL OF PROTEOMICS. ISSN 1874-3919, 2018, vol. 176, no., pp. 1-12. LIN, Yanhui - LI, Wei - ZHANG, Yanwei - XIA, Changjian - LIU, Yun - WANG, Caijie - XU, Ran - ZHANG, Lifeng. Identification of Genes/Proteins Related to Submergence Tolerance by Transcriptome and Proteome Analyses in Soybean. In SCIENTIFIC REPORTS. ISSN 2045-2322, 2019, vol. 9, no., pp. DE ANDRADE JUNIOR, Waldemar Viana - DOS SANTOS FILHO, Benedito Gomes - DE OLIVEIRA NETO, Candid Ferreira - CRUZ, Eniel David - OKUMURA, Ricardo Shigueru - DO NASCIMENTO, Vitor Resende - DA SILVA MARTINS, Jessica Taynara - MACHADO, Liliane Correa - PALHETA DE SOUSA, Diana Jhulia - SILVA TEIXEIRA, Jessica Suellen. Tolerance to waterlogging in Parkia gigantocarpa Ducke saplings. In BOIS ET FORETS DES TROPIQUES. ISSN 0006-579X, 2019, vol., no. 341, pp. 79-86. MORI, Kentaro - BEAUVOIT, Bertrand P. - BIAIS, Benoit - CHABANE, Maxime - ALLWOOD, J. William - DEBORDE, Catherine - MAUCOURT, Mickael - GOODACRE, Royston - CABASSON, Cecile - MOING, Annick - ROLIN, Dominique - GIBON, Yves. Central Metabolism Is Tuned to the Availability of Oxygen in Developing Melon Fruit. In FRONTIERS IN PLANT SCIENCE. ISSN 1664-462X, 2019, vol. 10, no., pp. PAN, Rui - HE, Dongli - XU, Le - ZHOU, Meixue - LI, Chengdao - WU, Chu - XU, Yanhao - ZHANG, Wenying. Proteomic analysis reveals response of differential wheat (Triticum aestivum L.) genotypes to oxygen deficiency stress. In BMC GENOMICS. ISSN 1471-2164, 2019, vol. 20, no., pp. BARUA, Pragya - LANDE, Nilesh Vikram - KUMAR, Sunil - CHAKRABORTY, Subhra - CHAKRABORTY, Niranjan. Quantitative phosphoproteomic analysis of legume using TiOinf2/inf-based enrichment coupled with isobaric labeling. In Methods in Molecular Biology, 2020-01-01, 2107, pp. 395-406. ISSN 10643745. Dostupné na: https://doi.org/10.1007/978-1-0716-0235-5_22. LAI, M.C. - LAI, Z.Y. - JHAN, L. - LAI, Y.S. - KAO, C.F. Prioritization and Evaluation of Flooding Tolerance Genes in Soybean [Glycine max (L.) Merr.]. In FRONTIERS IN GENETICS. JAN 27 2021, vol. 11. Dostupné na: https://doi.org/10.3389/fgene.2020.612131. HASHIGUCHI, A. - YAMAGUCHI, H. - HITACHI, K. - WATANABE, K. An Optimized Protein Extraction Method for Gel-Free Proteomic Analysis of Opuntia Ficus-Indica. In PLANTS-BASEL. JAN 2021, vol. 10, no. 1. Dostupné na: https://doi.org/10.3390/plants10010115. DE OLIVEIRA-BUSATTO, L.A. - GIORDANO, C.P.D. - DA SILVA, M.F. - UHRY, D. - GUZMAN, F. - WIEBKE-STROHM, B. - LI, Z.L. - BREDEMEIER, C. - BODANESE-ZANETTINI, M.H. Identification of Functional Genetic Variations Underlying Flooding Tolerance in Brazilian Soybean Genotypes. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. SEP 2022, vol. 23, no. 18. Dostupné na: https://doi.org/10.3390/ijms231810611. KHAN, M.N. - AHMED, I. - DIN, I.U. - NOURELDEEN, A. - DARWISH, H. - KHAN, M. Proteomic insight into soybean response to flooding stress reveals changes in energy metabolism and cell wall modifications. In PLOS ONE. ISSN 1932-6203, MAY 5 2022, vol. 17, no. 5. Dostupné na: https://doi.org/10.1371/journal.pone.0264453. CHANDRA, Subhash - DAS, Reecha T. - NAGAR, Shivani - SATPUTE, G. K. - KUMAWAT, G. - RATNAPARKHE, M. B. - GUPTA, Sanjay - RAJESH, V. - NATARAJ, V. - SHIVAKUMAR, M. - SRIVASTVA, Manoj - MEENA, Shashi - KAVISHWAR, Rucha - KAMBLE, Viraj G. - BORAH, Munmi - KUMAR, Amit - DESHMUKH, M. P. - MEHTRE, S. P. Soybean Improvement for Waterlogging Tolerance. In Soybean Improvement: Physiological, Molecular and Genetic Perspectives, 2022-01-01, pp. 73-98. Dostupné na: https://doi.org/10.1007/978-3-031-12232-3_3. STANIAK, M. - SZPUNAR-KROK, E. - KOCIRA, A. Responses of Soybean to Selected Abiotic Stresses-Photoperiod, Temperature and Water. AGRICULTURE-BASEL. JAN 2023, vol. 13, no. 1. Dostupné na: https://doi.org/10.3390/agriculture13010146. LUAN, H.Y. - LI, H.T. - LI, Y. - CHEN, C.Y. - LI, S.F. - WANG, Y. - YANG, J. - XU, M. - SHEN, H.Q. - QIAO, H.L. - WANG, J. Transcriptome analysis of barley (iHordeum vulgare/i L.) under waterlogging stress, and overexpression of the iHvADH4/i gene confers waterlogging tolerance in transgenic iArabidopsis/i. BMC PLANT BIOLOGY. ISSN 1471-2229, JAN 30 2023, vol. 23, no. 1. Dostupné na: https://doi.org/10.1186/s12870-023-04081-6. LICAJ, I. - DI MEO, M.C. - FIORILLO, A. - SAMPERNA, S. - MARRA, M. - ROCCO, M. Comparative Analysis of the Response to Polyethylene Glycol-Simulated Drought Stress in Roots from Seedlings of "Modern" and "Ancient" Wheat Varieties. PLANTS-BASEL. ISSN 2223-7747, FEB 2023, vol. 12, no. 3. Dostupné na: https://doi.org/10.3390/plants12030428. RAKKAMMAL, Kasinathan - RAM, P. S.Jeevan - RAMESH, Manikandan. Advances in proteomics research in environmental stress response in plants. In Biology and Biotechnology of Environmental Stress Tolerance in Plants: Sustainable Approaches for Enhancing Environmental Stress Tolerance, 2023-07-21, 3, pp. 401-430. Category ADCA - Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2010 Registered in WOS Registered in SCOPUS Registered in CCC DOI 10.1021/pr100179f 
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rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2010 2009 5.132 2.001 Q1
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