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Need for database extension for reliable identification of bacteria from extreme environments using MALDI TOF mass spectrometry
- Názov
Title Need for database extension for reliable identification of bacteria from extreme environments using MALDI TOF mass spectrometry Author Kopčáková Anna 1984- SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV SCOPUS RID ORCID Co-authors Stramová Zuzana SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV Kvasnová S. Godány Andrej SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Perháčová Zuzana Pristaš Peter 1962 SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV SCOPUS RID ORCID Source document Chemical Papers. Vol. 68 (2014), p. 1435–1442 Language eng - English Country SK - Slovak Republic Document kind rozpis článkov z periodík (rbx) Citations POPOVIC, N.T. - KAZAZIC, S.P. - STRUNJAK-PEROVIC, I. - COZ-RAKOVAC, R. Differentiation of environmental aquatic bacterial isolates by MALDI-TOF MS. ENVIRONMENTAL RESEARCH. ISSN 0013-9351, 2017, vol. 152, p. 7-16. RAHI, P. - PRAKASH, O. - SHOUCHE, Y.S. Matrix-Assisted Laser Desorption/lonization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists. FRONTIERS IN MICROBIOLOGY, vol. 7, 2016. ISSN 1664-302X SWAROOP, B.S. - VICTORIA, S.N. - MANIVANNAN, R. Azadirachta indica leaves extract as inhibitor for microbial corrosion of copper by Arthrobacter sulfureus in neutral pH conditions-A remedy to blue green water problem. JOURNAL OF THE TAIWAN INSTITUTE OF CHEMICAL ENGINEERS. ISSN 1876-1070, JUL 2016, vol. 64, p. 269-278. BOUMEHIRA, A.Z. - EL-ENSHASY, H.A. - HACENE, H. - ELSAYED, E.A. - AZIZ, R. - PARK, E.Y. Recent progress on the development of antibiotics from the genus Micromonospora. BIOTECHNOLOGY AND BIOPROCESS ENGINEERING. ISSN 1226-8372, MAR 2016, vol. 21, no. 2, p. 199-223. BEALE, D.J. - KARPE, A.V. - JADHAV, S. - MUSTER, T.H. - PALOMBO, E.A. Omics-based approaches and their use in the assessment of microbial-influenced corrosion of metals. CORROSION REVIEWS. ISSN 0334-6005, MAR 2016, vol. 34, no. 1-2, p. 1-15. SANTOS, I.C. - HILDENBRAND, Z.L. - SCHUG, K.A. Applications of MALDI-TOF MS in environmental microbiology. ANALYST. ISSN 0003-2654, 2016, vol. 141, no. 10, p. 2827-2837. SCERBOVA, Jana - LAUKOVA, Andrea. Sensitivity to Enterocins of Thermophilic Campylobacter spp. from Different Poultry Species. In FOODBORNE PATHOGENS AND DISEASE. ISSN 1535-3141, 2016, vol. 13, no. 12, pp. 668-673. CIHALOVA, Kristyna - DOSTALOVA, Simona - HEGEROVA, Dagmar - SKALICKOVA, Sylvie - VACULOVICOVA, Marketa - KIZEK, Rene - KOPEL, Pavel. RAPID IDENTIFICATION OF BACTERIA BY BIOBARCODE ASSAY. In MENDELNET 2015, 2015, vol., no., pp. 448-452. AVANZI, Ingrid Regina - GRACIOSO, Louise Hase - GALLUZZI BALTAZAR, Marcela dos Passos - KAROLSKI, Bruno - PERPETUO, Elen Aquino - OLLER DO NASCIMENTO, Claudio Augusto. Rapid bacteria identification from environmental mining samples using MALDI-TOF MS analysis. In ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH. ISSN 0944-1344, 2017, vol. 24, no. 4, pp. 3717-3726. TIMPERIO, Anna Maria - GORRASI, Susanna - ZOLLA, Lello - FENICE, Massimiliano. Evaluation of MALDI-TOF mass spectrometry and MALDI BioTyper in comparison to 16S rDNA sequencing for the identification of bacteria isolated from Arctic sea water. In PLOS ONE. ISSN 1932-6203, 2017, vol. 12, no. 7,art. no. e0181860. WEI, Min - XU, Caihong - CHEN, Jianmin - ZHU, Chao - LI, Jiarong - LV, Ganglin. Characteristics of bacterial community in cloud water at Mt Tai: similarity and disparity under polluted and non-polluted cloud episodes. In ATMOSPHERIC CHEMISTRY AND PHYSICS. ISSN 1680-7316, 2017, vol. 17, no. 8, pp. 5253-5270. Zhang, L., Sandrin, T.R. 2016 Maximizing the taxonomic resolution of MALDI-TOF-MS-based approaches to bacterial characterization: From culture conditions through data analysis IN 2016 Applications of Mass Spectrometry in Microbiology: From Strain Characterization to Rapid Screening for Antibiotic Resistance pp. 147-181 Spitaels, F., Wieme, A.D., Vandamme, P. MALDI-TOF MS as a novel tool for dereplication and characterization of microbiota in bacterial diversity studies IN 2016 Applications of Mass Spectrometry in Microbiology: From Strain Characterization to Rapid Screening for Antibiotic Resistance pp. 235-256 KURTBÓKE, D. Ecology and habitat distribution of actinobacteria. In Biology and Biotechnology of Actinobacteria, 2017-01-01, pp. 123-149. MEYER, Birte - RABENSTEIN, Andreas - KUEVER, Jan. Mass spectrometry: A powerful tool for the identification of wine-related bacteria and yeasts. In Biology of Microorganisms on Grapes, in Must and in Wine, 2017-01-01, pp. 659-701. JANG, K.S. - KIM, Y.H. Rapid and robust MALDI-TOF MS techniques for microbial identification: a brief overview of their diverse applications. In JOURNAL OF MICROBIOLOGY. APR 2018, vol. 56, no. 4, p. 209-216. LAUKOVA, A. - STROMPFOVA, V. - SCERBOVA, J. - SIMONOVA, M.P. Virulence Factor Genes Incidence among Enterococci from Sewage Sludge in Eastern Slovakia following Safety Aspect. In BIOMED RESEARCH INTERNATIONAL. ISSN 2314-6133, OCT 7 2019, vol. 2019, art. no. 2735895. HUSCHEK, D. - WITZEL, K. Rapid dereplication of microbial isolates using matrix-assisted laser desorption ionization time-of-flight mass spectrometry: A mini-review. In JOURNAL OF ADVANCED RESEARCH. ISSN 2090-1232, SEP 2019, vol. 19, SI, p. 99-104. POMASTOWSKI, P. - ZLOCH, M. - RODZIK, A. - LIGOR, M. - KOSTRZEWA, M. - BUSZEWSKI, B. Analysis of bacteria associated with honeys of different geographical and botanical origin using two different identification approaches: MALDI-TOF MS and 16S rDNA PCR technique. In PLOS ONE. ISSN 1932-6203, MAY 23 2019, vol. 14, no. 5. YIN, M.Y. - WU, C. - LI, H.J. - JIA, Z.X. - DENG, Q.L. - WANG, S. - ZHANG, Y.K. Simultaneous Sensing of Seven Pathogenic Bacteria by Guanidine-Functionalized Upconversion Fluorescent Nanoparticles. In ACS OMEGA. ISSN 2470-1343, MAY 2019, vol. 4, no. 5, p. 8953-8959. ANTUNES, T.C. - BALLARINI, A.E. - VAN DER SAND, S. Temporal variation of bacterial population and response to physical and chemical parameters along a petrochemical industry wastewater treatment plant. In ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS. ISSN 0001-3765, 2019, vol. 91, no. 2, art. no. e20180394. BROCKMANN, M. - AUPPERLE-LELLBACH, H. - GENTIL, M. - HEUSINGER, A. - MULLER, E. - MARSCHANG, R.E. - PEES, M. Challenges in microbiological identification of aerobic bacteria isolated from the skin of reptiles. In PLOS ONE. ISSN 1932-6203, OCT 19 2020, vol. 15, no. 10. JANKOSKI, P.R. - CORREA, A.P.F. - BRANDELLI, A. - DA MOTTA, A.S. Biological activity of bacteria isolated from wetland sediments collected from a conservation unit in the southern region of Brazil. In ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS. ISSN 0001-3765, 2021, vol. 93, no. 3. Dostupné na: https://doi.org/10.1590/0001-3765202120191269. LARA, B.G. - WROBEL, K. - ESCOBOSA, A.R.C. - TORRES, O.S. - DONIS, I.E. - WROBEL, K. Mass spectrometry-based identification of bacteria isolated from industrially contaminated site in Salamanca (Mexico) and evaluation of their potential for DDT degradation. In FOLIA MICROBIOLOGICA. ISSN 0015-5632, JUN 2021, vol. 66, no. 3, p. 355-369. Dostupné na: https://doi.org/10.1007/s12223-020-00848-8. DESIDERATO, C.K. - SACHSENMAIER, S. - OVCHINNIKOV, K.V. - STOHR, J. - JACKSCH, S. - DESEF, D.N. - CRAUWELS, P. - EGERT, M. - DIEP, D.B. - GOLDBECK, O. - RIEDEL, C.U. Identification of Potential Probiotics Producing Bacteriocins Active against Listeria monocytogenes by a Combination of Screening Tools. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. AUG 2021, vol. 22, no. 16. Dostupné na: https://doi.org/10.3390/ijms22168615. PINAR-MENDEZ, A. - FERNANDEZ, S. - BAQUERO, D. - VILARO, C. - GALOFRE, B. - GONZALEZ, S. - RODRIGO-TORRES, L. - ARAHAL, D.R. - MACIAN, M.C. - RUVIRA, M.A. - AZNAR, R. - CAUDET-SEGARRA, L. - SALA-COMORERA, L. - LUCENA, F. - BLANCH, A.R. - GARCIA-ALJARO, C. Rapid and improved identification of drinking water bacteria using the Drinking Water Library, a dedicated MALDI-TOF MS database. In WATER RESEARCH. ISSN 0043-1354, SEP 15 2021, vol. 203. Dostupné na: https://doi.org/10.1016/j.watres.2021.117543. JHARIYA, Upasana - PAL, Sukdeb. Proteomic, Genomic, and Metabolomic Understanding and Designing for Bioremediation of Environmental Contaminants. In Omics Insights in Environmental Bioremediation, 2022-01-01, pp. 415-435. Dostupné na: https://doi.org/10.1007/978-981-19-4320-1_18. Category ADDA - Scientific papers in domestic journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2014 Registered in WOS Registered in SCOPUS Registered in CCC DOI 10.2478/s11696-014-0612-0 Olsson Birgitta Rhodes Nicholas P. Rovenský Jozef Rudebeck Mattias Santucci Annalisa article
Efficacy and safety of once-daily nitisinone for patients with alkaptonuria (SONIA 2): an interantional, multicentre, open-label, randomised controlled trialAutorSpoluautoriGlasová Helena SAVBIOMED ; SAVUKTRA - Biomedicínske centrum SAVImrich Richard SAVUKTRA ; SAVBIOMED - Ústav klinického a translačného výskumu BMC SAVZaťková Andrea 1971- SAVBIOMED ; SAVUKTRA - Biomedicínske centrum SAV
rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2014 2013 1.193 Q3 0.308 Q2
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