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Transformation of real-time PCR fluorescence data to target gene quantity
Title Transformation of real-time PCR fluorescence data to target gene quantity Author Čikoš Štefan 1963 SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV SCOPUS RID ORCID Co-authors Koppel Juraj 1954 SAVFYHOZ - Ústav fyziológie hospodárskych zvierat SAV SCOPUS RID ORCID Source document Analytical Biochemistry. Vol. 384, (2009), p. 1-10 Language eng - English Country US - United States of America Document kind rozpis článkov z periodík (rbx) Citations HIRAKAWA, Y. - MEDH, R.D. - METZENBERG, S. Quantitative polymerase chain reaction analysis by deconvolution of internal standard. In BMC MOLECULAR BIOLOGY. ISSN 1471-2199, APR 29 2010, vol. 11. VOJTISEK, M. - ILES, A. - PAMME, N. Rapid, multistep on-chip DNA hybridisation in continuous flow on magnetic particles. In BIOSENSORS & BIOELECTRONICS. ISSN 0956-5663, MAY 15 2010, vol. 25, no. 9, p. 2172-2176. TUOMI, J.M. - VOORBRAAK, F. - JONES, D.L. - RUIJTER, J.M. Bias in the C-q value observed with hydrolysis probe based quantitative PCR can be corrected with the estimated PCR efficiency value. In METHODS. ISSN 1046-2023, APR 2010, vol. 50, no. 4, p. 313-322. WANG, F.C. - WANG, J.P. - LIU, D.Q. - SU, Y.P. Normalizing genes for real-time polymerase chain reaction in epithelial and nonepithelial cells of mouse small intestine. In ANALYTICAL BIOCHEMISTRY. ISSN 0003-2697, APR 15 2010, vol. 399, no. 2, p. 211-217. HATCH, A.C. - FISHER, J.S. - TOVAR, A.R. - HSIEH, A.T. - LIN, R. - PENTONEY, S.L. - YANG, D.L. - LEE, A.P. 1-Million droplet array with wide-field fluorescence imaging for digital PCR. LAB ON A CHIP. ISSN 1473-0197, 2011, vol. 11, no. 22, p. 3838-3845. PERS-KAMCZYC, E. - ZMORA, P. - CIESLAK, A. - SZUMACHER-STRABEL, M. Development of nucleic acid based techniques and possibilities of their application to rumen microbial ecology research. JOURNAL OF ANIMAL AND FEED SCIENCES. ISSN 1230-1388, 2011, vol. 20, no. 3, p. 315-337. SCHNEIDER, A. - PFEIFER, L.F.M. - NETO, J.W.D. - HAX, L.T. - ANTUNES, M.M. - DEL PINO, F.A.B. - PALUDO, G.R. - CORREA, M.N. Effect of exogenous insulin and fasting on growth hormone receptor and IGF-I expression in the pre-ovulatory follicle of ewes. ANIMAL. ISSN 1751-7311, SEP 2011, vol. 5, no. 9, p. 1420-1425. XU, L.Y. - MA, X.R. - CUI, B. - LI, X.Y. - NING, G. - WANG, S. Selection of Reference Genes for qRT-PCR in High Fat Diet-Induced Hepatic Steatosis Mice Model. MOLECULAR BIOTECHNOLOGY. ISSN 1073-6085, JUL 2011, vol. 48, no. 3, p. 255-262. SCHNEIDER, A. - PFEIFER, L.F.M. - HAX, L.T. - PALUDO, G.R. - DEL PINO, F.A.B. - DIONELLO, N.J.L. - CORREA, M.N. Insulin-like growth factor and growth hormone receptor in postpartum lactating beef cows. PESQUISA AGROPECUARIA BRASILEIRA. ISSN 0100-204X, AUG 2010, vol. 45, no. 8, p. 925-931. BOGGY, G.J. - WOOLF, P.J. A Mechanistic Model of PCR for Accurate Quantification of Quantitative PCR Data. PLOS ONE. ISSN 1932-6203, AUG 30 2010, vol. 5, no. 8. KANG, Min-Jung - YU, Hannah - KIM, Sook-Kyung - PARK, Sang-Ryoul - YANG, Inchul. Quantification of Trace-Level DNA by Real-Time Whole Genome Amplification. PLOS ONE. ISSN 1932-6203, DEC 9 2011, vol. 6, no. 12. TOFFOLATTI, Silvia Laura - VENTURINI, Giovanni - MAFFI, Dario - VERCESI, Annamaria. Phenotypic and histochemical traits of the interaction between Plasmopara viticola and resistant or susceptible grapevine varieties. In BMC Plant Biology, 2012-08-01, 12, pp. BATISTA SALES MARQUES, Thalita Ewellyn - DE MENDONCA, Leila Rodrigues - PEREIRA, Marilia Gabriela - DE ANDRADE, Tiago Gomes - GARCIA-CAIRASCO, Norberto - PACO-LARSON, Maria Luisa - GOES GITAI, Daniel Leite. Validation of Suitable Reference Genes for Expression Studies in Different Pilocarpine-Induced Models of Mesial Temporal Lobe Epilepsy. PLOS ONE. ISSN 1932-6203, AUG 23 2013, vol. 8, no. 8. HAUSDORF, Lena - NEUMANN, Maria - BERGMANN, Ingo - SOBIELLA, Kerstin - MUNDT, Kerstin - FROEHLING, Antje - SCHLUETER, Oliver - KLOCKE, Michael. Occurrence and genetic diversity of Arcobacter spp. in a spinach-processing plant and evaluation of two Arcobacter-specific quantitative PCR assays. SYSTEMATIC AND APPLIED MICROBIOLOGY. ISSN 0723-2020, JUN 2013, vol. 36, no. 4, p. 235-243. NISHIO, Yuki - UNO, Shigeyasu - NAKAZATO, Kazuo. Three-Dimensional Simulation of DNA Sensing by Ion-Sensitive Field-Effect Transistor: Optimization of DNA Position and Orientation. JAPANESE JOURNAL OF APPLIED PHYSICS. ISSN 0021-4922, APR 2013, vol. 52, no. 4, 2, SI. CHENG, Du - VIGIL, Katie - SCHANES, Paula - BROWN, Richard N. - ZHONG, Jianmin. Prevalence and burden of two rickettsial phylotypes (G021 and G022) in Ixodes pacificus from California by real-time quantitative PCR. TICKS AND TICK-BORNE DISEASES. ISSN 1877-959X, 2013, vol. 4, no. 4, p. 280-287. TELLINGHUISEN, J. - SPIESS, A.N. Comparing real-time quantitative polymerase chain reaction analysis methods for precision, linearity, and accuracy of estimating amplification efficiency. ANALYTICAL BIOCHEMISTRY. ISSN 0003-2697, MAR 15 2014, vol. 449, p. 76-82. LUO, Q.C. - LIU, C.L. - WU, Z.Y. - WANG, H.Y. - LI, W.F. - ZHANG, K.H. - HUANG, D. - ZHANG, J. - ZHANG, W.X. Monitoring of the prokaryotic diversity in pit mud from a Luzhou-flavour liquor distillery and evaluation of two predominant archaea using qPCR assays. JOURNAL OF THE INSTITUTE OF BREWING. ISSN 0046-9750, 2014, vol. 120, no. 3, p. 253-261. LIANG, H.P. - LUO, Q.C. - ZHANG, A. - WU, Z.Y. - ZHANG, W.X. Comparison of bacterial community in matured and degenerated pitmud fromChinese Luzhou-flavour liquor distillery in different regions. JOURNAL OF THE INSTITUTE OF BREWING. ISSN 0046-9750, 2016, vol. 122, no. 1, p. 48-54. SMITH, S.A. - HUGHES, E. - COATS, E.R. - BRINKMAN, C.K. - MCDONALD, A.G. - HARPER, J.R. - FERIS, K. - NEWBY, D. Toward sustainable dairy waste utilization: enhanced VFA and biogas synthesis via upcycling algal biomass cultured on waste effluent. JOURNAL OF CHEMICAL TECHNOLOGY AND BIOTECHNOLOGY. ISSN 0268-2575, JAN 2016, vol. 91, no. 1, p. 113-121. VELASCO ACOSTA, Diego Andres - SCHNEIDER, Augusto - BESPALHOK JACOMETO, Carolina - RINCON, Joao Alvarado - CARDOSO, Felipe - NUNES CORREA, Marcio. Effect of bovine somatotropin injection in late pregnant Holstein heifers on metabolic parameters and steroidogenic potential of the first postpartum dominant follicle. In THERIOGENOLOGY. ISSN 0093-691X, 2017, vol. 104, no., pp. 164-172. YUAN, Jinxia - CHEN, Hongtao - GE, Dawei - XU, Yu - XU, Haihua - YANG, Yang - GU, Ming - ZHOU, Yuhe - ZHU, Jingdong - GE, Ting - CHEN, Qun - GAO, Yue - WANG, Yanqing - LI, Xiaowei - ZHAO, Yanfang. Mir-21 Promotes Cardiac Fibrosis After Myocardial Infarction Via Targeting Smad7. In CELLULAR PHYSIOLOGY AND BIOCHEMISTRY. ISSN 1015-8987, 2017, vol. 42, no. 6, pp. 2207-2219. AZIZAH, N. - HASHIM, U. - NADZIRAH, Sh. - ARSHAD, M. K. Md - RUSLINDA, A. R. - GOPINATH, Subash C. B. Comparison Of Different Methods For Extraction And Purification Of Human Papillomavirus (HPV) DNA From Serum Samples. In 11TH ASIAN CONFERENCE ON CHEMICAL SENSORS (ACCS2015). ISSN 0094-243X, 2017, vol. 1808, art. no. UNSP 020037-1. MCCLELLAND, A.D. - HERMAN-EDELSTEIN, M. - KOMERS, R. - JHA, J.C. - WINBANKS, C.E. - HAGIWARA, S. - GREGOREVIC, P. - KANTHARIDIS, P. - COOPER, M.E. miR-21 promotes renal fibrosis in diabetic nephropathy by targeting PTEN and SMAD7. CLINICAL SCIENCE. ISSN 0143-5221, DEC 1 2015, vol. 129, no. 12, p. 1237-1249. STOWE, E.J. - COATS, E.R. - BRINKMAN, C.K. Dairy manure resource recovery utilizing two-stage anaerobic digestion - Implications of solids fractionation. BIORESOURCE TECHNOLOGY. ISSN 0960-8524, DEC 2015, vol. 198, p. 237-245. LI, X.Y. - YANG, Q.W. - BAI, J.P. - XUAN, Y.L. - WANG, Y.M. Evaluation of eight reference genes for quantitative polymerase chain reaction analysis in human T lymphocytes co-cultured with mesenchymal stem cells. MOLECULAR MEDICINE REPORTS. ISSN 1791-2997, NOV 2015, vol. 12, no. 5, B, p. 7721-7727. SANTOS, E.A.D. - MARQUES, T.E.B.S. - MATOS, H.D. - LEITE, J.P. - GARCIA-CAIRASCO, N. - PACO-LARSON, M.L. - GITAI, D.L.G. Diurnal Variation Has Effect on Differential Gene Expression Analysis in the Hippocampus of the Pilocarpine-Induced Model of Mesial Temporal Lobe Epilepsy. PLOS ONE. ISSN 1932-6203, OCT 16 2015, vol. 10, no. 10. LIANG, H.P. - LI, W.F. - LUO, Q.C. - LIU, C.L. - WU, Z.Y. - ZHANG, W.X. Analysis of the bacterial community in aged and aging pit mud of Chinese Luzhou-flavour liquor by combined PCR-DGGE and quantitative PCR assay. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE. ISSN 0022-5142, OCT 2015, vol. 95, no. 13, p. 2729-2735. TELLINGHUISEN, J. - SPIESS, A.N. Bias and Imprecision in Analysis of Real-Time Quantitative Polymerase Chain Reaction Data. ANALYTICAL CHEMISTRY. ISSN 0003-2700, SEP 1 2015, vol. 87, no. 17, p. 8925-8931. LUO, Q.C. - LIU, C.L. - LI, W.F. - WU, Z.Y. - ZHANG, W.X. Comparison between Bacterial Diversity of Aged and Aging Pit Mud from Luzhou-flavor Liquor Distillery. FOOD SCIENCE AND TECHNOLOGY RESEARCH. ISSN 1344-6606, JUL 2014, vol. 20, no. 4, p. 867-873. DE ARAUJO, M.A. - MARQUES, T.E.B.S. - TANIELE-SILVA, J. - SOUZA, F.M.D. - DE ANDRADE, T.G. - GARCIA-CAIRASCO, N. - PACO-LARSON, M.L. - GITAI, D.L.G. Identification of Endogenous Reference Genes for the Analysis of microRNA Expression in the Hippocampus of the Pilocarpine-Induced Model of Mesial Temporal Lobe Epilepsy. PLOS ONE. ISSN 1932-6203, JUN 25 2014, vol. 9, no. 6. REN, Xiu-xiu - WANG, Yuchen - LIU, YongXiang - TAN, Yumei - REN, Chunguang - GE, Yongyi - LIU, Zuoyi. Comparative transcriptome analysis of the calcium signaling and expression analysis of sodium/calcium exchanger in Aspergillus cristatus. In JOURNAL OF BASIC MICROBIOLOGY. ISSN 0233-111X, 2018, vol. 58, no. 1, pp. 76-87. WARREN, Laura A. - SHIH, Andrew - RENTEIRA, Susana Marquez - SECKIN, Tamer - BLAU, Brandon - SIMPFENDORFER, Kim - METZT, Christine N. - GREGERSEN, Peter K. Analysis of menstrual effluent: diagnostic potential for endometriosis. In MOLECULAR MEDICINE. ISSN 1076-1551, 2018, vol. 24, art. no. UNSP 1. LEE, Deuk-Ju - KIM, Jong-Dae - KIM, Yu-Seop - SONG, Hye-Jeong - PARK, Chan-Young. Evaluation-independent system for DNA section amplification. In BIOMEDICAL ENGINEERING ONLINE. ISSN 1475-925X, 2018, vol. 17, art. no. 150. GREEN, Michael R. - SAMBROOK, Joseph. Analysis and normalization of real-time polymerase chain reaction (PCR) experimental data. In Cold Spring Harbor Protocols. ISSN 19403402, 2018-10-01, 2018, 10, pp. 769-777. CURIS, Emmanuel - COURTIN, Cindie - GEOFFROY, Pierre Alexis - LAPLANCHE, Jean-Louis - SAUBAMEA, Bruno - MARIE-CLAIRE, Cynthia. Determination of sets of covariating gene expression using graph analysis on pairwise expression ratios. In BIOINFORMATICS. ISSN 1367-4803, 2019, vol. 35, no. 2, pp. 258-265. LEE, Deuk-Ju - HWANG, Ji-Soo - PARK, Ji-Seong - PARK, Chan-Young - SONG, Hye-Jeong - KIM, Yu-Seop - KIM, Jongwon - KIM, Jong-Dae. Miniaturization of Fluorescence Detection for PCR chip. In OPTICAL DIAGNOSTICS AND SENSING XIX: TOWARD POINT-OF-CARE DIAGNOSTICS. ISSN 0277-786X, 2019, vol. 10885, art. no. 108850L. LEE, Deuk-Ju - HWANG, Ji-Soo - PARK, Ji-Seong - PARK, Chan-Young - SONG, Hye-Jeong - KIM, Yu-Seop - KIM, Jong-Dae. Compact Fluorescence Detection System for Polymerase Chain Reaction Chips. In SENSORS AND MATERIALS. ISSN 0914-4935, 2019, vol. 31, no. 5, pp. 1635-1646. VIEIRA ISOLA, Jose Victor - VELASCO ACOSTA, Diego Andres - BESPALHOK JACOMETO, Carolina - ALVARADO RINCON, Joao Alveiro - SILVA SILVEIRA, Pedro Augusto - CORREA, Marcio Nunes - SCHNEIDER, Augusto. Intrafollicular paraoxonase 1 activity and the steroidogenic potential of the first post-partum dominant follicle in dairy cows. In REPRODUCTION IN DOMESTIC ANIMALS. ISSN 0936-6768, 2019, vol. 54, no. 6, pp. 924-927. KOO, Seul-Bit-Na - CHI, Hyeon-Gyu - KIM, Jong-Dae - KIM, Yu-Seop - PARK, Ji-Sung - PARK, Chan-Young - LEE, Deuk-Ju. Multiple Compact Camera Fluorescence Detector for Real-Time PCR Devices. In SENSORS, 2021, vol. 21, no. 21, pp. Dostupné na: https://doi.org/10.3390/s21217013. WANG, Xin - GENG, Xing Chao - XU, Ming Zhe. Discussions on the detection strategy and method for bio-distribution of gene therapy medicine. In Chinese Journal of New Drugs, 2021-06-15, 30, 11, pp. 997-1000. ISSN 10033734. SMOOT, L. - MELLIN, J. - BRINKMAN, C.K. - POPOVA, I. - COATS, E.R. Interrogating nitritation at a molecular level: Understanding the potential influence ofi Nitrobacter/i spp.. In WATER RESEARCH. ISSN 0043-1354, OCT 1 2022, vol. 224. Dostupné na: https://doi.org/10.1016/j.watres.2022.119074. Category ADCA - Scientific papers in foreign journals registered in Current Contents Connect with IF (impacted) Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2009 Registered in WOS Registered in SCOPUS DOI 10.1016/j.ab.2008.08.031 
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rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2009 2008 3.088 Q1 1.097 Q2
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