Number of the records: 1
Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies
Title Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies Author Maliogka Varvara Co-authors Minafra Angelantonio Saldarelli Pasquale Ruiz-García Ana B. Glasa Miroslav 1972 SAVBIOMED ; SAVVIR - Biomedicínske centrum SAV ORCID Katis Nikolaos OLmos A. Source document Viruses. Vol. 10, no. 8 (2018), p. E436 Language eng - English URL URL link Document kind rozpis článkov z periodík (rbx) Citations SINGH, Khushwant - NEUBAUEROVA, Tereza - KUNDU, Jiban Kumar. Quantitative analysis of the interaction of heterologous viruses with Plum pox virus in C5 HoneySweet transgenic plums. In JOURNAL OF INTEGRATIVE AGRICULTURE. ISSN 2095-3119, 2019, vol. 18, no. 10, pp. 2302-2310. KATSAROU, Konstantina - BARDANI, Eirini - KALLEMI, Paraskevi - KALANTIDIS, Kriton. Viral Detection: Past, Present, and Future. In BIOESSAYS. ISSN 0265-9247, 2019, vol. 41, no. 10, pp. YANG, Caixia - ZHANG, Song - HAN, Tong - FU, Jingjing - DI SERIO, Francesco - CAO, Mengji. Identification and Characterization of a Novel Emaravirus Associated With Jujube (Ziziphus jujuba Mill.) Yellow Mottle Disease. In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, 2019, vol. 10, no., pp. UMER, Muhammad - LIU, Jiwen - YOU, Huafeng - XU, Chuan - DONG, Kaili - LUO, Ni - KONG, Linghong - LI, Xuepei - HONG, Ni - WANG, Guoping - FAN, Xudong - KOTTA-LOIZOU, Ioly - XU, Wenxing. Genomic, Morphological and Biological Traits of the Viruses Infecting Major Fruit Trees. In VIRUSES-BASEL, 2019, vol. 11, no. 6, pp. PASIN, Fabio - MENZEL, Wulf - DAROS, Jose-Antonio. Harnessed viruses in the age of metagenomics and synthetic biology: an update on infectious clone assembly and biotechnologies of plant viruses. In PLANT BIOTECHNOLOGY JOURNAL. ISSN 1467-7644, 2019, vol. 17, no. 6, pp. 1010-1026. ZHENG, Y.Y. - BU, F.D. - WU, C.J. - CHEN, J.G. - LIU, Z. - XIANG, B.C. - CUI, B.M. First Report of Mume Virus A Infection of Prunus persica in China. In PLANT DISEASE. ISSN 0191-2917, OCT 2020, vol. 104, no. 10, p. 2741-2742. XUAN, Z.Y. - LI, S. - ZHANG, S. - RAN, W.Y. - ZHOU, Y. - YANG, F.Y. - ZHOU, C.Y. - CAO, M.J. Complete genome sequence of citrus yellow spot virus, a newly discovered member of the familyBetaflexiviridae. In ARCHIVES OF VIROLOGY. ISSN 0304-8608, NOV 2020, vol. 165, no. 11, p. 2709-2713. NERY, F.M.B. - MELO, F.L. - BOITEUX, L.S. - RIBEIRO, S.G. - RESENDE, R.O. - ORILIO, A.F. - BATISTA, J.G. - LIMA, M.F. - PEREIRA-CARVALHO, R.C. Molecular Characterization of Hovenia Dulcis-Associated Virus 1 (HDaV1) and 2 (HDaV2): New Tentative Species within the OrderPicornavirales. In VIRUSES-BASEL. SEP 2020, vol. 12, no. 9. BELABESS, Z. - SAGOUTI, T. - RHALLABI, N. - TAHIRI, A. - MASSART, S. - TAHZIMA, R. - LAHLALI, R. - JIJAKLI, M.H. Citrus Psorosis Virus: Current Insights on a Still Poorly Understood Ophiovirus. In MICROORGANISMS. AUG 2020, vol. 8, no. 8. JO, Y. - CHOI, H. - LIAN, S. - CHO, J.K. - CHU, H. - CHO, W.K. Identification of viruses infecting six plum cultivars in Korea by RNA-sequencing. In PEERJ. ISSN 2167-8359, JUL 29 2020, vol. 8. LI, C.J. - YAEGASHI, H. - KISHIGAMI, R. - KAWAKUBO, A. - YAMAGISHI, N. - ITO, T. - YOSHIKAWA, N. Apple Russet Ring and Apple Green Crinkle Diseases: Fulfillment of Koch's Postulates by Virome Analysis, Amplification of Full-Length cDNA of Viral Genomes,in vitroTranscription of Infectious Viral RNAs, and Reproduction of Symptoms on Fruits of Apple Trees Inoculated With Viral RNAs. In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, JUL 10 2020, vol. 11. SIDHARTHAN, V.K. - SEVANTHI, A.M. - JAISWAL, S. - BARANWAL, V.K. Robust Virome Profiling and Whole Genome Reconstruction of Viruses and Viroids Enabled by Use of Available mRNA and sRNA-Seq Datasets in Grapevine (Vitis viniferaL.). In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, JUN 5 2020, vol. 11. WU, J.X. - ZHANG, S. - ATTA, S. - YANG, C.X. - ZHOU, Y. - DI SERIO, F. - ZHOU, C.Y. - CAO, M.J. Discovery and Survey of a New Mandarivirus Associated with Leaf Yellow Mottle Disease of Citrus in Pakistan. In PLANT DISEASE. ISSN 0191-2917, JUN 2020, vol. 104, no. 6, p. 1593-1600. HODGE, B.A. - PAUL, P.A. - STEWART, L.R. Occurrence and High-Throughput Sequencing of Viruses in Ohio Wheat. In PLANT DISEASE. ISSN 0191-2917, JUN 2020, vol. 104, no. 6, p. 1789-1800. DELLA BARTOLA, M. - BYRNE, S. - MULLINS, E. Characterization of Potato Virus Y Isolates and Assessment of Nanopore Sequencing to Detect and Genotype Potato Viruses. In VIRUSES-BASEL. APR 2020, vol. 12, no. 4. KINOTI, W.M. - NANCARROW, N. - DANN, A. - RODONI, B.C. - CONSTABLE, F.E. Updating the Quarantine Status of Prunus Infecting Viruses in Australia. In VIRUSES-BASEL. FEB 2020, vol. 12, no. 2. WRIGHT, A.A. - CROSS, A.R. - HARPER, S.J. A bushel of viruses: Identification of seventeen novel putative viruses by RNA-seq in six apple trees. In PLOS ONE. ISSN 1932-6203, JAN 13 2020, vol. 15, no. 1. KATSIANI, A. - STAINTON, D. - LAMOUR, K. - TZANETAKIS, I.E. The population structure of Rose rosette virus in the USA. In JOURNAL OF GENERAL VIROLOGY. ISSN 0022-1317, 2020, vol. 101, no. 6, p. 676-684. JIA, A.N. - YAN, C.G. - YIN, H. - SUN, R. - XIA, F. - GAO, L. - ZHANG, Y.J. - LI, Y.Q. Small RNA and Transcriptome Sequencing of a Symptomatic Peony Plant Reveals Mixed Infections with Novel Viruses. In PLANT DISEASE. ISSN 0191-2917, DEC 2021, vol. 105, no. 12, p. 3816-3828. FAIZAH, A. - GANESAN, V. - KHALID, H.A. - AZLINA, H.N. - SARAH, T. - JAMEEL, R.A.O. Characterisation of virus-related red tip disease in pineapple (Ananas comosus). In RESEARCH JOURNAL OF BIOTECHNOLOGY. ISSN 2278-4535, DEC 2021, vol. 16, no. 12, p. 10-17. COSTA, L.C. - HU, X.J. - MALAPI-WIGHT, M. - FOSTER, J. - MCFARLAND, C. - HURTADO-GONZALES, O.P. Identification of a novel robigovirus and a Prunus-infecting tepovirus in Pyrus communis and their transmissibility on Malus spp.. In EUROPEAN JOURNAL OF PLANT PATHOLOGY. ISSN 0929-1873, FEB 2022, vol. 162, no. 2, p. 275-288. SIMKOVICH, A.J. - LI, Y.Z. - KOHALMI, S.E. - GRIFFITHS, J.S. - WANG, A.M. Molecular Identification of Prune Dwarf Virus (PDV) Infecting Sweet Cherry in Canada and Development of a PDV Full-Length Infectious cDNA Clone. In VIRUSES-BASEL. OCT 2021, vol. 13, no. 10. MINUTOLO, M. - CINQUE, M. - ALTAMURA, G. - DI SERIO, F. - ALIOTO, D. - NAVARRO, B. Identification, full-length genome sequencing, and field survey of citrus vein enation virus in Italy. In PHYTOPATHOLOGIA MEDITERRANEA. ISSN 0031-9465, SEP 13 2021, vol. 60, no. 2, p. 293-301. FENG, C.H. - CAO, M.J. - LI, L.J. - WANG, R.R. - SHI, R.J. - WANG, Y. - GAO, N.N. Complete genome analysis of two isolates of citrus leaf blotch virus in apple in Henan province of China. In TROPICAL PLANT PATHOLOGY. ISSN 1983-2052, DEC 2021, vol. 46, no. 6, p. 719-724. MALAPI-WIGHT, M. - ADHIKARI, B. - ZHOU, J. - HENDRICKSON, L. - MAROON-LANGO, C.J. - MCFARLAND, C. - FOSTER, J.A. - HURTADO-GONZALES, O.P. HTS-Based Diagnostics of Sugarcane Viruses: Seasonal Variation and Its Implications for Accurate Detection. In VIRUSES-BASEL. AUG 2021, vol. 13, no. 8. RUMBOU, A. - VAINIO, E.J. - BUTTNER, C. Towards the Forest Virome: High-Throughput Sequencing Drastically Expands Our Understanding on Virosphere in Temperate Forest Ecosystems. In MICROORGANISMS. AUG 2021, vol. 9, no. 8. FAN, X.D. - ZHANG, Z.P. - LI, C. - REN, F. - HU, G.J. - ZHANG, B.D. - DONG, Y.F. High-Throughput Sequencing Indicates a Novel Marafivirus in Grapevine Showing Vein-Clearing Symptoms. In PLANTS-BASEL. JUL 2021, vol. 10, no. 7. FAN, X.D. - LI, C. - ZHANG, Z.P. - REN, F. - HU, G.J. - SHEN, H.L. - ZHANG, B.D. - DONG, Y.F. Identification and Characterization of a Novel Emaravirus From Grapevine Showing Chlorotic Mottling Symptoms. In FRONTIERS IN MICROBIOLOGY. ISSN 1664-302X, JUN 7 2021, vol. 12. LICCIARDELLO, G. - FERRARO, R. - SCUDERI, G. - RUSSO, M. - CATARA, A.F. A Simulation of the Use of High Throughput Sequencing as Pre-Screening Assay to Enhance the Surveillance of Citrus Viruses and Viroids in the EPPO Region. In AGRICULTURE-BASEL. MAY 2021, vol. 11, no. 5. XYLOGIANNI, E. - MARGARIA, P. - KNIERIM, D. - SARELI, K. - WINTER, S. - CHATZIVASSILIOU, E.K. Virus Surveys in Olive Orchards in Greece Identify Olive Virus T, a Novel Member of the Genus Tepovirus. In PATHOGENS. MAY 2021, vol. 10, no. 5. KUTNJAK, D. - TAMISIER, L. - ADAMS, I. - BOONHAM, N. - CANDRESSE, T. - CHIUMENTI, M. - DE JONGHE, K. - KREUZE, J.F. - LEFEBVRE, M. - SILVA, G. - MALAPI-WIGHT, M. - MARGARIA, P. - PLESKO, I.M. - MCGREIG, S. - MIOZZI, L. - REMENANT, B. - REYNARD, J.S. - ROLLIN, J. - ROTT, M. - SCHUMPP, O. - MASSART, S. - HAEGEMAN, A. A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses. In MICROORGANISMS. APR 2021, vol. 9, no. 4. BESTER, R. - COOK, G. - BREYTENBACH, J.H.J. - STEYN, C. - DE BRUYN, R. - MAREE, H.J. Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and viroids. In VIROLOGY JOURNAL. MAR 22 2021, vol. 18, no. 1. HEO, S. - CHUNG, Y.S. Rapid real-time detection method of ACLSV and ASSVd for apple quarantine field. In PLANT BIOTECHNOLOGY REPORTS. ISSN 1863-5466, APR 2021, vol. 15, no. 2, p. 187-195. MEHETRE, G.T. - LEO, V.V. - SINGH, G. - SOROKAN, A. - MAKSIMOV, I. - YADAV, M.K. - UPADHYAYA, K. - HASHEM, A. - ALSALEH, A.N. - DAWOUD, T.M. - ALMAARY, K.S. - SINGH, B.P. Current Developments and Challenges in Plant Viral Diagnostics: A Systematic Review. In VIRUSES-BASEL. MAR 2021, vol. 13, no. 3. LLANES-ALVAREZ, Y. - PENA-BARZAGA, I. - BATISTA-LE RIVEREND, L. - PACHECO, R. - ZAMORA-RODRIGUEZ, V. - BENITEZ-GALEANO, M.J. - RIVAS, F. - BERTALMIO, A. - HERNANDEZ-RODRIGUEZ, L. Prevalence of mild citrus tristeza virus isolates of the T30 genotype in Cuban commercial citrus fields after the dissemination of huanglongbing. In CROP PROTECTION. ISSN 0261-2194, FEB 2021, vol. 140. FUCHS, M. - ALMEYDA, C.V. - AL RWAHNIH, M. - ATALLAH, S.S. - CIENIEWICZ, E.J. - FARRAR, K. - FOOTE, W.R. - GOLINO, D.A. - GOMEZ, M.I. - HARPER, S.J. - KELLY, M.K. - MARTIN, R.R. - MARTINSON, T. - OSMAN, F.M. - PARK, K. - SCHARLAU, V. - SMITH, R. - TZANETAKIS, I.E. - VIDALAKIS, G. - WELLIVER, R. Economic Studies Reinforce Efforts to Safeguard Specialty Crops in the United States. In PLANT DISEASE. ISSN 0191-2917, JAN 2021, vol. 105, no. 1, p. 14-26. COSTA, L.C. - ATHA, B. - HU, X.J. - LAMOUR, K. - YANG, Y. - O'CONNELL, M. - MCFARLAND, C. - FOSTER, J.A. - HURTADO-GONZALES, O.P. High-throughput detection of a large set of viruses and viroids of pome and stone fruit trees by multiplex PCR-based amplicon sequencing. In FRONTIERS IN PLANT SCIENCE. ISSN 1664-462X, DEC 12 2022, vol. 13. Dostupné na: https://doi.org/10.3389/fpls.2022.1072768. CHEN, L. - XU, Z.L. - LIU, P.G. - ZHU, Y. - LIN, T.B. - LI, T.Y. - LV, Z.Q. - WEI, J. Identification of Three Viruses Infecting Mulberry Varieties. In VIRUSES-BASEL. NOV 2022, vol. 14, no. 11. Dostupné na: https://doi.org/10.3390/v14112564. VáRALLYAY, E. - PRIBYLOVá, J. - GALBACS, Z.N. - JAHAN, A. - VARGA, T. - SPAK, J. - LENZ, O. - FRáNOVá, J. - SEDLáK, J. - KOLONIUK, I. Detection of Apple Hammerhead Viroid, Apple Luteovirus 1 and Citrus Concave Gum-Associated Virus in Apple Propagation Materials and Orchards in the Czech Republic and Hungary. In VIRUSES-BASEL. NOV 2022, vol. 14, no. 11. Dostupné na: https://doi.org/10.3390/v14112347. YU, H.D. - MA, K. - LIU, Z. - LIANG, X.F. - ZHANG, S. - CAO, M.J. Molecular and biological characterization of citrus concave gum-associated virus in China. In TROPICAL PLANT PATHOLOGY. ISSN 1983-2052, DEC 2022, vol. 47, no. 6, p. 795-799. Dostupné na: https://doi.org/10.1007/s40858-022-00530-z. DEBNATH, S. - SETH, D. - PRAMANIK, S. - ADHIKARI, S. - MONDAL, P. - SHERPA, D. - SEN, D. - MUKHERJEE, D. - BHATTACHARJEE, R. - MUKERJEE, N. A comprehensive review and meta-analysis of recent advances in biotechnology for plant virus research and significant accomplishments in human health and the pharmaceutical industry. In BIOTECHNOLOGY AND GENETIC ENGINEERING REVIEWS. ISSN 0264-8725, 2022 SEP 4 2022. Dostupné na: https://doi.org/10.1080/02648725.2022.2116309. OKIC, A. - WETZEL, T. - ZARGHANI, S.N. - MASSART, S. - GRAHIC, J. - GASI, F. - KONJIC, A. - VONCINA, D. Occurrence and Distribution Patterns of Plum Tree Viruses and Genetic Diversity of Sharka Isolates in Bosnia and Herzegovina. In HORTICULTURAE. SEP 2022, vol. 8, no. 9. Dostupné na: https://doi.org/10.3390/horticulturae8090783. MILUSHEVA, S. - JAMES, D. Determination of biological properties of cherry virus Trakiya and its incidence on sweet cherry (iPrunus avium/i L.) in Bulgaria. In JOURNAL OF PLANT DISEASES AND PROTECTION. ISSN 1861-3829, DEC 2022, vol. 129, no. 6, p. 1451-1460. Dostupné na: https://doi.org/10.1007/s41348-022-00651-2. KOLONIUK, I. - MATYáSOVá, A. - BRáZDOVá, S. - VESELá, J. - PRIBYLOVá, J. - FRáNOVá, J. - ELENA, S.F. Transmission of Diverse Variants of Strawberry Viruses Is Governed by a Vector Species. In VIRUSES-BASEL. JUL 2022, vol. 14, no. 7. Dostupné na: https://doi.org/10.3390/v14071362. XUAN, Z.Y. - ZHANG, S. - LI, P. - YANG, F.Y. - CHEN, H.M. - LIU, K.H. - ZHOU, Y. - LI, Z.A. - ZHOU, C.Y. - CAO, M.J. Apple stem grooving virus is associated with leaf yellow mottle mosaic disease on iCitrus grandis/i icv/i. Huangjinmiyou in China. In JOURNAL OF INTEGRATIVE AGRICULTURE. ISSN 2095-3119, JUL 2022, vol. 21, no. 7, p. 2031-2041. Dostupné na: https://doi.org/10.1016/S2095-3119(21)63823-6. MA, Y.X. - CHE, H.Y. - GAO, S.F. - LIN, Y.T. - LI, S.F. Diverse Novel Viruses Coinfecting the Tropical Ornamental Plant iPolyscias balfouriana/i in China. In VIRUSES-BASEL. JUN 2022, vol. 14, no. 6. Dostupné na: https://doi.org/10.3390/v14061120. BARATH, D. - JAKSA-CZOTTER, N. - VARGA, T. - VARALLYAY, E. Viromes of Hungarian Peach Trees Identified by High-Throughput Sequencing of Small RNAs. In PLANTS-BASEL. JUN 2022, vol. 11, no. 12. Dostupné na: https://doi.org/10.3390/plants11121591. LEE, H.J. - JEONG, R.D. Metatranscriptomic Analysis of Plant Viruses in Imported Pear and Kiwifruit Pollen. In PLANT PATHOLOGY JOURNAL. ISSN 1598-2254, JUN 2022, vol. 38, no. 3, p. 220-228. Dostupné na: https://doi.org/10.5423/PPJ.OA.03.2022.0047. WANG, Y.X. - WANG, Y. - WANG, G.P. - LI, Q.Y. - ZHANG, Z. - LI, L. - LV, Y.Z. - YANG, Z.K. - GUO, J.S. - HONG, N. Molecular Characteristics and Incidence of Apple Rubbery Wood Virus 2 and Citrus Virus A Infecting Pear Trees in China. In VIRUSES-BASEL. MAR 2022, vol. 14, no. 3. Dostupné na: https://doi.org/10.3390/v14030576. BETTONI, J.C. - FAZIO, G. - COSTA, L.C. - HURTADO-GONZALES, O.P.P. - AL RWAHNIH, M. - NEDROW, A. - VOLK, G.M.M. Thermotherapy Followed by Shoot Tip Cryotherapy Eradicates Latent Viruses and Apple Hammerhead Viroid from In Vitro Apple Rootstocks. In PLANTS-BASEL. MAR 2022, vol. 11, no. 5. Dostupné na: https://doi.org/10.3390/plants11050582. NUZZO, F. - MOINE, A. - NERVA, L. - PAGLIARANI, C. - PERRONE, I. - BOCCACCI, P. - GRIBAUDO, I. - CHITARRA, W. - GAMBINO, G. Grapevine virome and production of healthy plants by somatic embryogenesis. In MICROBIAL BIOTECHNOLOGY. ISSN 1751-7915, MAY 2022, vol. 15, no. 5, p. 1357-1373. Dostupné na: https://doi.org/10.1111/1751-7915.14011. DI GASPERO, G. - RADOVIC, S. - DE LUCA, E. - SPADOTTO, A. - MAGRIS, G. - FALGINELLA, L. - CATTONARO, F. - MARRONI, F. Evaluation of sensitivity and specificity in RNA-Seq-based detection of grapevine viral pathogens. In JOURNAL OF VIROLOGICAL METHODS. ISSN 0166-0934, FEB 2022, vol. 300. Dostupné na: https://doi.org/10.1016/j.jviromet.2021.114383. CHIRKOV, S.N. - SHEVELEVA, A. - SNEZHKINA, A. - KUDRYAVTSEVA, A. - KRASNOV, G. - ZAKUBANSKIY, A. - MITROFANOVA, I. Highly divergent isolates of chrysanthemum virus B and chrysanthemum virus R infecting chrysanthemum in Russia. In PEERJ. ISSN 2167-8359, JAN 5 2022, vol. 10. Dostupné na: https://doi.org/10.7717/peerj.12607. RODRIGUEZ-VERASTEGUI, L.L. - RAMIREZ-ZAVALETA, C.Y. - CAPILLA-HERNANDEZ, M.F. - GREGORIO-JORGE, J. Viruses Infecting Trees and Herbs That Produce Edible Fleshy Fruits with a Prominent Value in the Global Market: An Evolutionary Perspective. In PLANTS-BASEL. JAN 2022, vol. 11, no. 2. Dostupné na: https://doi.org/10.3390/plants11020203. Category ADMA - Scientific papers in foreign impacted journals registered in Web of Sciences or Scopus Category of document (from 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Type of document článok Year 2018 Registered in WOS Registered in SCOPUS DOI 10.3390/v10080436 article
rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore N rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2018 2017 3.761 Q2 1.805 Q1
Number of the records: 1