Počet záznamov: 1  

QSAR analysis of antimicrobial and haemolytic effects of cyclic cationic antimicrobial peptides derived from protegrin-1

  1. NázovQSAR analysis of antimicrobial and haemolytic effects of cyclic cationic antimicrobial peptides derived from protegrin-1
    Autor Frecer Vladimír 1957- SAVEXONK - Ústav experimentálnej onkológie SAV    ORCID
    Zdroj.dok. Bioorganic & medicinal chemistry. Vol. 14, no. 17 (2006), p. 6065-6074. - Oxford : Pergamon-Elsevier
    Jazyk dok.eng - angličtina
    KrajinaGB - Veľká Británia
    Druh dok.rozpis článkov z periodík (rbx)
    OhlasyROBINSON, John A. beta-Hairpin Peptidomimetics: Design, Structures and Biological Activities. In ACCOUNTS OF CHEMICAL RESEARCH. ISSN 0001-4842, 2008, vol. 41, no. 10, pp. 1278.
    HADLEY, E. B. - HANCOCK, R. E. W. Strategies for the Discovery and Advancement of Novel Cationic Antimicrobial Peptides. In CURRENT TOPICS IN MEDICINAL CHEMISTRY. ISSN 1568-0266, 2010, vol. 10, no. 18, pp. 1872.
    MIKUT, Ralf. Computer-Based Analysis, Visualization, and Interpretation of Antimicrobial Peptide Activities. In ANTIMICROBIAL PEPTIDES: METHODS AND PROTOCOLS. ISSN 1064-3745, 2010, vol. 618, no., pp. 287.
    BHONSLE, Jayendra B. - CLARK, Tiffany - BARTOLOTTI, Libero - HICKS, Rickey P. A Brief Overview of Antimicrobial Peptides Containing Unnatural Amino Acids and Ligand-Based Approaches for Peptide Ligands. In CURRENT TOPICS IN MEDICINAL CHEMISTRY. ISSN 1568-0266, 2013, vol. 13, no. 24, pp. 3205.
    JENSSEN, Havard. Descriptors for antimicrobial peptides. In EXPERT OPINION ON DRUG DISCOVERY. ISSN 1746-0441, 2011, vol. 6, no. 2, pp. 171.
    CAPONE, Ricardo - MUSTATA, Mirela - JANG, Hyunbum - ARCE, Fernando Teran - NUSSINOV, Ruth - LAL, Ratnesh. Antimicrobial Protegrin-1 Forms Ion Channels: Molecular Dynamic Simulation, Atomic Force Microscopy, and Electrical Conductance Studies. In BIOPHYSICAL JOURNAL. ISSN 0006-3495, 2010, vol. 98, no. 11, pp. 2644.
    FJELL, Christopher D. - JENSSEN, Havard - HILPERT, Kai - CHEUNG, Warren A. - PANTE, Nelly - HANCOCK, Robert E. W. - CHERKASOV, Artem. Identification of Novel Antibacterial Peptides by Chemoinformatics and Machine Learning. In JOURNAL OF MEDICINAL CHEMISTRY. ISSN 0022-2623, 2009, vol. 52, no. 7, pp. 2006.
    YOUSEFINEJAD, Saeed - HEMMATEENEJAD, Bahram. Chemometrics tools in QSAR/QSPR studies: A historical perspective. In CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS. ISSN 0169-7439, 2015, vol. 149, no., pp. 177.
    TROSKIE, Anscha Mari - RAUTENBACH, Marina - DELATTIN, Nicolas - VOSLOO, Johan Arnold - DATHE, Margitta - CAMMUE, Bruno P. A. - THEVISSEN, Karin. Synergistic Activity of the Tyrocidines, Antimicrobial Cyclodecapeptides from Bacillus aneurinolyticus, with Amphotericin B and Caspofungin against Candida albicans Biofilms. In ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. ISSN 0066-4804, 2014, vol. 58, no. 7, pp. 3697.
    PARK, Sungkyu - STROMSTEDT, Adam A. - GORANSSON, Ulf. Cyclotide Structure-Activity Relationships: Qualitative and Quantitative Approaches Linking Cytotoxic and Anthelmintic Activity to the Clustering of Physicochemical Forces. In PLOS ONE. ISSN 1932-6203, 2014, vol. 9, no. 3, pp.
    TORRENT, Marc - NOGUES, M. Victoria - BOIX, Ester. Discovering New In Silico Tools for Antimicrobial Peptide Prediction. In CURRENT DRUG TARGETS. ISSN 1389-4501, 2012, vol. 13, no. 9, pp. 1148.
    CRUZ-MONTEAGUDO, Maykel - ROMERO, Yansy - CORDEIRO, M. Natalia D. S. - BORGES, Fernanda. Desirability-based Multi-criteria Virtual Screening of Selective Antimicrobial Cyclic beta-Hairpin Cationic Peptidomimetics. In CURRENT PHARMACEUTICAL DESIGN. ISSN 1381-6128, 2013, vol. 19, no. 12, pp. 2148.
    XIMENES, Valdecir F. - LOPES, Mariana G. - PETRONIO, Maicon Segalla - REGASINI, Luis Octavio - SIQUEIRA SILVA, Dulce H. - DA FONSECA, Luis M. Inhibitory Effect of Gallic Acid and Its Esters on 2,2 '-Azobis(2-amidinopropane)hydrochloride (AAPH)-Induced Hemolysis and Depletion of Intracellular Glutathione in Erythrocytes. In JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. ISSN 0021-8561, 2010, vol. 58, no. 9, pp. 5355.
    SZABOOVA, Andrea - KUZELKA, Ondrej - ZELEZNY, Filip. Prediction of Antimicrobial Activity of Peptides using Relational Machine Learning. In 2012 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE WORKSHOPS (BIBMW). ISSN 2163-6966, 2012, vol., no., pp.
    HE, Yi - LAZARIDIS, Themis. Activity Determinants of Helical Antimicrobial Peptides: A Large-Scale Computational Study. In PLOS ONE. ISSN 1932-6203, 2013, vol. 8, no. 6, pp.
    BRANDT, Wolfgang - HAUPT, V. Joachim - WESSJOHANN, Ludger A. Chemoinformatic Analysis of Biologically Active Macrocycles. In CURRENT TOPICS IN MEDICINAL CHEMISTRY. ISSN 1568-0266, 2010, vol. 10, no. 14, pp. 1361.
    SPATHELF, Barbara M. - RAUTENBACH, Marina. Anti-listerial activity and structure-activity relationships of the six major tyrocidines, cyclic decapeptides from Bacillus aneurinolyticus. In BIOORGANIC & MEDICINAL CHEMISTRY. ISSN 0968-0896, 2009, vol. 17, no. 15, pp. 5541.
    KIM, Sung-Min - KIM, Joung-Min - CHO, Hyeongjin - LEE, Keun-Hyeung. Synthesis of antibacterial pseudopeptides with less hemolytic activity from a cytotoxic peptide and their pH-dependent activity. In BIOORGANIC & MEDICINAL CHEMISTRY LETTERS. ISSN 0960-894X, 2009, vol. 19, no. 19, pp. 5627.
    VISHNEPOLSKY, Boris - PIRTSKHALAVA, Malak. Prediction of Linear Cationic Antimicrobial Peptides Based on Characteristics Responsible for Their Interaction with the Membranes. In JOURNAL OF CHEMICAL INFORMATION AND MODELING. ISSN 1549-9596, 2014, vol. 54, no. 5, pp. 1512.
    PASUPULETI, Mukesh - SCHMIDTCHEN, Artur - MALMSTEN, Martin. Antimicrobial peptides: key components of the innate immune system. In CRITICAL REVIEWS IN BIOTECHNOLOGY. ISSN 0738-8551, 2012, vol. 32, no. 2, pp. 143.
    LEUSSA, Adrienne Nyango-Nkeh - RAUTENBACH, Marina. Detailed SAR and PCA of the Tyrocidines and Analogues Towards Leucocin A-Sensitive and Leucocin A-Resistant Listeria monocytogenes. In CHEMICAL BIOLOGY & DRUG DESIGN. ISSN 1747-0277, 2014, vol. 84, no. 5, pp. 543.
    CRUZ-MONTEAGUDO, Maykel - BORGES, Fernanda - CORDEIRO, M. Natalia D. S. Jointly Handling Potency and Toxicity of Antimicrobial Peptidomimetics by Simple Rules from Desirability Theory and Chemoinformatics. In JOURNAL OF CHEMICAL INFORMATION AND MODELING. ISSN 1549-9596, 2011, vol. 51, no. 12, pp. 3060.
    SANCHEZ-GOMEZ, Susana - JAPELJ, Bostjan - JERALA, Roman - MORIYON, Ignacio - FERNANDEZ ALONSO, Mirian - LEIVA, Jose - BLONDELLE, Sylvie E. - ANDRAE, Joerg - BRANDENBURG, Klaus - LOHNER, Karl - MARTINEZ DE TEJADA, Guillermo. Structural Features Governing the Activity of Lactoferricin-Derived Peptides That Act in Synergy with Antibiotics against Pseudomonas aeruginosa In Vitro and In Vivo. In ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. ISSN 0066-4804, 2011, vol. 55, no. 1, pp. 218.
    MUNK, J. K. - RITZ, C. - FLIEDNER, F. P. - FRIMODT-MOLLER, N. - HANSEN, P. R. Novel Method To Identify the Optimal Antimicrobial Peptide in a Combination Matrix, Using Anoplin as an Example. In ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. ISSN 0066-4804, 2014, vol. 58, no. 2, pp. 1063.
    REEN, F. Jerry - GUTIERREZ-BARRANQUERO, Jose A. - DOBSON, Alan D. W. - ADAMS, Claire - O'GARA, Fergal. Emerging Concepts Promising New Horizons for Marine Biodiscovery and Synthetic Biology. In MARINE DRUGS. ISSN 1660-3397, 2015, vol. 13, no. 5, pp. 2924.
    YOO, Barney - SHIN, Sung Bin Y. - HUANG, Mia Lace - KIRSHENBAUM, Kent. Peptoid Macrocycles: Making the Rounds with Peptidomimetic Oligomers. In CHEMISTRY-A EUROPEAN JOURNAL. ISSN 0947-6539, 2010, vol. 16, no. 19, pp. 5528.
    BORKAR, Maheshkumar R. - PISSURLENKAR, Raghuvir R. S. - COUTINHO, Evans C. Mapping activity elements of protegrin antimicrobial peptides by HomoSAR. In RSC ADVANCES. ISSN 2046-2069, 2015, vol. 5, no. 96, pp. 78790.
    FERNANDEZ, M. - CABALLERO, J. Analysis of protegrin structure-activity relationships: the structural characteristics important for antimicrobial activity using smoothed amino acid sequence descriptors. In MOLECULAR SIMULATION. ISSN 0892-7022, 2007, vol. 33, no. 8, pp. 689.
    KALINOWSKA, M. - SWISLOCKA, R. - BORAWSKA, A. - PIEKUT, J. - LEWANDOWSKI, W. Spectroscopic (FT-IR, FT-Raman, UV) and microbiological studies of di-substituted benzoates of alkali metals. In SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY. ISSN 1386-1425, 2008, vol. 70, no. 1, pp. 126.
    MIKUT, Ralf - HILPERT, Kai. Interpretable Features for the Activity Prediction of Short Antimicrobial Peptides Using Fuzzy Logic. In INTERNATIONAL JOURNAL OF PEPTIDE RESEARCH AND THERAPEUTICS. ISSN 1573-3149, 2009, vol. 15, no. 2, pp. 129.
    BOLINTINEANU, Dan S. - KAZNESSIS, Yiannis N. Computational studies of protegrin antimicrobial peptides: A review. In PEPTIDES. ISSN 0196-9781, 2011, vol. 32, no. 1, pp. 188.
    YU, Lanlan - GUO, Lin - DING, Jeak Ling - HO, Bow - FENG, Si-shen - POPPLEWELL, Jonathan - SWANN, Marcus - WOHLAND, Thorsten. Interaction of an artificial antimicrobial peptide with lipid membranes. In BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES. ISSN 0005-2736, 2009, vol. 1788, no. 2, pp. 333.
    CHONGSIRIWATANA, Nathaniel P. - PATCH, James A. - CZYZEWSKI, Ann M. - DOHM, Michelle T. - IVANKIN, Andrey - GIDALEVITZ, David - ZUCKERMANN, Ronald N. - BARRON, Annelise E. Peptoids that mimic the structure, function, and mechanism of helical antimicrobial peptides. In PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. ISSN 0027-8424, 2008, vol. 105, no. 8, pp. 2794.
    TROSKIE, Anscha M. - DE BEER, Abre - VOSLOO, Johan A. - JACOBS, Karin - RAUTENBACH, Marina. Inhibition of agronomically relevant fungal phytopathogens by tyrocidines, cyclic antimicrobial peptides isolated from Bacillus aneurinolyticus. In MICROBIOLOGY-SGM. ISSN 1350-0872, 2014, vol. 160, no., pp. 2089.
    VOOTURI, S. K. - FIRESTINE, S. M. Synthetic Membrane-Targeted Antibiotics. In CURRENT MEDICINAL CHEMISTRY. ISSN 0929-8673, 2010, vol. 17, no. 21, pp. 2292.
    FJELL, Christopher D. - HISS, Jan A. - HANCOCK, Robert E. W. - SCHNEIDER, Gisbert. Designing antimicrobial peptides: form follows function. In NATURE REVIEWS DRUG DISCOVERY. ISSN 1474-1776, 2012, vol. 11, no. 1, pp. 37.
    CARRASCO-CASTILLA, Janet - JAVIER HERNANDEZ-ALVAREZ, Alan - JIMENEZ-MARTINEZ, Cristian - FIDEL GUTIERREZ-LOPEZ, Gustavo - DAVILA-ORTIZ, Gloria. Use of Proteomics and Peptidomics Methods in Food Bioactive Peptide Science and Engineering. In FOOD ENGINEERING REVIEWS. ISSN 1866-7910, 2012, vol. 4, no. 4, pp. 224.
    RAUTENBACH, Marina - VLOK, N. Mare - STANDER, Manetjie - HOPPE, Heinnich C. Inhibition of malaria parasite blood stages by tyrocidines, membrane-active cyclic peptide antibiotics from Bacillus brevis. In BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES. ISSN 0005-2736, 2007, vol. 1768, no. 6, pp. 1488.
    XU, Yongtao - YU, Shui - ZOU, Jian-Wei - HU, Guixiang - RAHMAN, Noorsaadah A. B. D. - OTHMAN, Rozana Binti - TAO, Xia - HUANG, Meilan. Identification of Peptide Inhibitors of Enveloped Viruses Using Support Vector Machine. In PLOS ONE. ISSN 1932-6203, 2015, vol. 10, no. 12, pp.
    OBRECHT, D. - ROBINSON, J. A. - BERNARDINI, F. - BISANG, C. - DEMARCO, S. J. - MOEHLE, K. - GOMBERT, F. O. Recent Progress in the Discovery of Macrocyclic Compounds as Potential Anti-Infective Therapeutics. In CURRENT MEDICINAL CHEMISTRY. ISSN 0929-8673, 2009, vol. 16, no. 1, pp. 42.
    AROURI, Ahmad - DATHE, Margitta - BLUME, Alfred. The helical propensity of KLA amphipathic peptides enhances their binding to gel-state lipid membranes. In BIOPHYSICAL CHEMISTRY. ISSN 0301-4622, 2013, vol. 180, no., pp. 10.
    TORRENT, Marc - ANDREU, David - NOGUES, Victoria M. - BOIX, Ester. Connecting Peptide Physicochemical and Antimicrobial Properties by a Rational Prediction Model. In PLOS ONE. ISSN 1932-6203, 2011, vol. 6, no. 2, pp.
    CHERKASOV, Artem - HILPERT, Kai - JENSSEN, Havard - FJELL, Christopher D. - WALDBROOK, Matt - MULLALY, Sarah C. - VOLKMER, Rudolf - HANCOCK, Robert E. W. Use of Artificial Intelligence in the Design of Small Peptide Antibiotics Effective against a Broad Spectrum of Highly Antibiotic-Resistant Superbugs. In ACS CHEMICAL BIOLOGY. ISSN 1554-8929, 2009, vol. 4, no. 1, pp. 65.
    KIM, Sung-Min - KIM, Joung-Min - JOSHI, Bishnu Prasad - CHO, Hyeongjin - LEE, Keun-Hyeung. Indolicidin-derived antimicrobial peptide analogs with greater bacterial selectivity and requirements for antibacterial and hemolytic activities. In BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. ISSN 1570-9639, 2009, vol. 1794, no. 2, pp. 185.
    SIGNARVIC, Rachel S. - DEGRADO, William F. Metal-Binding Dependent Disruption of Membranes by Designed Helices. In JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. ISSN 0002-7863, 2009, vol. 131, no. 9, pp. 3377.
    CHAUDHARY, K. - KUMAR, R. - SINGH, S. - TUKNAIT, A. - GAUTAM, A. - MATHUR, D. - ANAND, P. - VARSHNEY, G.C. - RAGHAVA, G.P.S. A Web Server and Mobile App for Computing Hemolytic Potency of Peptides. In SCIENTIFIC REPORTS. ISSN 2045-2322, MAR 8 2016, vol. 6.
    CAO, Jun Zhe - GU, Hong. A Review on Prediction of Antimicrobial Peptides Based on Computational Methods. In Jisuanji Xuebao/Chinese Journal of Computers. ISSN 02544164, 2017-12-01, 40, 12, pp. 2777-2796.
    FAYA, Mbuso - KALHAPURE, Rahul S. - KUMALO, Hezekiel M. - WADDAD, Ayman Y. - OMOLO, Calvin - GOVENDER, Thirumala. Conjugates and nano-delivery of antimicrobial peptides for enhancing therapeutic activity. In JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY. ISSN 1773-2247, 2018, vol. 44, no., pp. 153-171.
    CARDOSO, Marlon H. - MENEGUETTI, Beatriz T. - COSTA, Bruna O. - BUCCINI, Danieli F. - OSHIRO, Karen G. N. - PREZA, Sergio L. E. - CARVALHO, Cristiano M. E. - MIGLIOLO, Ludovico - FRANCO, Octavio L. Non-Lytic Antibacterial Peptides That Translocate Through Bacterial Membranes to Act on Intracellular Targets. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, vol. 20, no. 19, pp.
    WAGHU, F.H. - GAWDE, U. - GOMATAM, A. - COUTINHO, E. - IDICULA-THOMAS, S. A QSAR modeling approach for predicting myeloid antimicrobial peptides with high sequence similarity. In CHEMICAL BIOLOGY & DRUG DESIGN. ISSN 1747-0277, DEC 2020, vol. 96, no. 6, p. 1408-1417.
    JUKIC, M. - BREN, U. Machine Learning in Antibacterial Drug Design. In FRONTIERS IN PHARMACOLOGY. MAY 3 2022, vol. 13. Dostupné na: https://doi.org/10.3389/fphar.2022.864412.
    KategóriaADCA - Vedecké práce v zahraničných karentovaných časopisoch impaktovaných
    Kategória (od 2022)V3 - Vedecký výstup publikačnej činnosti z časopisu
    Typ výstupučlánok
    Rok vykazovania2006
    Registrované vWOS
    Registrované vSCOPUS
    DOI 10.1016/j.bmc.2006.05.005
    článok

    článok

    rokCCIFIF Q (best)JCR Av Jour IF PercSJRSJR Q (best)CiteScore
    A
    rok vydaniarok metrikyIFIF Q (best)SJRSJR Q (best)
    200620052.286Q20.894Q1
Počet záznamov: 1  

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