Počet záznamov: 1  

The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri

  1. NázovThe allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri
    Autor Shimizu-Inatsugi Rie
    Spoluautori Zozomová-Lihová Judita SAVBOTAN - Botanický ústav SAV    RID    ORCID

    Iwanaga Hiroko

    Kudoh Hiroshi

    Marhold Karol 1959- SAVBOTAN - Botanický ústav SAV    RID    ORCID

    Savolainen Outi

    Watanabe Kuniaki

    Yakubov Valentin V.

    Shimizu Kentaro K.

    Zdroj.dok. Molecular Ecology. Vol. 18, no. 19 (2009), p. 4024-4048
    Jazyk dok.eng - angličtina
    Druh dok.rozpis článkov z periodík (rbx)
    OhlasyRIESEBERG, L. - VINES, T. - KANE, N. Editorial and retrospective 2010. In MOLECULAR ECOLOGY, 2010, vol. 19, no. 1, p. 1-22.
    SCHMICKL, Roswitha - JORGENSEN, Marte H. - BRYSTING, Anne K. - KOCH, Marcus A. The evolutionary history of the Arabidopsis lyrata complex: a hybrid in the amphi-Beringian area closes a large distribution gap and builds up a genetic barrier. In BMC EVOLUTIONARY BIOLOGY, 2010, vol. 10.
    ITO, Yu - OHI-TOMA, Tetsuo - MURATA, Jin - TANAKA, Norio. HYBRIDIZATION AND POLYPLOIDY OF AN AQUATIC PLANT, RUPPIA (RUPPIACEAE), INFERRED FROM PLASTID AND NUCLEAR DNA PHYLOGENIES. In AMERICAN JOURNAL OF BOTANY, 2010, vol. 97, no. 7, p. 1156-1167.
    STEETS, Janette A. - TAKEBAYASHI, Naoki - BYRNES, Jeffrey M. - WOLF, Diana E. HETEROGENEOUS SELECTION ON TRICHOME PRODUCTION IN ALASKAN ARABIDOPSIS KAMCHATICA (BRASSICACEAE). In AMERICAN JOURNAL OF BOTANY, 2010, vol. 97, no. 7, p. 1098-1108.
    WANG, Wei-Kuang - HO, Chuan-Wen - HUNG, Kuo-Hsiang - WANG, Kuo-Hsiung - HUANG, Chi-Chun - ARAKI, Hitoshi - HWANG, Chi-Chuan - HSU, Tsai-Wen - OSADA, Naoki - CHIANG, Tzen-Yuh. Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: evidence of genome-wide admixture. In NEW PHYTOLOGIST, 2010, vol. 188, no. 2, p. 488-500.
    MANDAKOVA, Terezie - JOLY, Simon - KRZYWINSKI, Martin - MUMMENHOFF, Klaus - LYSAK, Martin A. Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis. In PLANT CELL, 2010, vol. 22, no. 7, p. 2277-2290.
    PIAZZA, Paolo - BAILEY, C. Donovan - CARTOLANO, Maria - KRIEGER, Jonathan - CAO, Jun - OSSOWSKI, Stephan - SCHNEEBERGER, Korbinian - HE, Fei - DE MEAUX, Juliette - HALL, Neil - MACLEOD, Norman - FILATOV, Dmitry - HAY, Angela - TSIANTIS, Miltos. Arabidopsis thaliana Leaf Form Evolved via Loss of KNOX Expression in Leaves in Association with a Selective Sweep. In CURRENT BIOLOGY, 2010, no. 24, p. 2223-2228.
    MANDAKOVA, T. - HEENAN, P.B. - LYSAK, M.A. Island species radiation and karyotypic stasis in Pachycladon allopolyploids. In BMC Evolutionary Biology, 2010, vol. 10, no . 1, no. art. 367.
    JORGENSEN, M.H. - EHRICH, D. - SCHMICKL, R. - KOCH, M.A. - BRYSTING, A.K. Interspecific and interploidal gene flow in Central European Arabidopsis (Brassicaceae). In BMC Evolutionary Biology, 2011, vol. 11. ISSN 1471-2148.
    SCHMICKL, R. - KOCH, M.A. Arabidopsis hybrid speciation processes. In Proceedings of the National Academy of Sciences of the United States of America, 2011, vol. 108, no. 34, p. 14192-14197. ISSN 0027-8424.
    GERMAN, D.A. - GRANT, J.R. - LYSAK, M.A. - AL-SHEHBAZ, I.A. Molecular phylogeny and systematics of the tribe Chorisporeae (Brassicaceae). In Plant Systematic and Evolution, 2011, vol. 294, no. 1-2, p. 65-86. ISSN 0378-2697.
    BRYSTING, A.K. - MATHIESEN, C. - MARCUSSEN, T. Challenges in polyploid phylogenetic reconstruction: A case story from the arctic-alpine Cerastium alpinum complex. In Taxon, 2011, vol. 60, no. 2, p. 333-347. ISSN 0040-0262.
    MODLISZEWSKI, Jennifer L. - WILLIS, John H. Allotetraploid Mimulus sookensis are highly interfertile despite independent origins. In Molecular Ecology, 2012, vol. 21, no. 21, p. 5280-5298. ISSN 0962-1083.
    REBERNIG, Carolin A. - WEISS-SCHNEEWEISS, Hanna - BLOECH, Cordula - TURNER, Barbara - STUESSY, Tod F. - OBERMAYER, Renate - VILLASENOR, Jose L. - SCHNEEWEISS, Gerald M. THE EVOLUTIONARY HISTORY OF THE WHITE-RAYED SPECIES OF MELAMPODIUM (ASTERACEAE) INVOLVED MULTIPLE CYCLES OF HYBRIDIZATION AND POLYPLOIDIZATION. In American Journal of Botany, 2012, vol. 99, no. 6, p. 1043-1057. ISSN 0002-9122.
    ALCAZAR, Ruben - PECINKA, Ales - AARTS, Mark G. M. - FRANSZ, Paul F. - KOORNNEEF, Maarten. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. In Current Opinion in Plant Biology, 2012, vol. 15, no. 2, p. 205-211. ISSN 1369-5266.
    HIGASHI, Hiroyuki - IKEDA, Hajime - SETOGUCHI, Hiroaki. Population fragmentation causes randomly fixed genotypes in populations of Arabidopsis kamchatica in the Japanese Archipelago. In Journal of Plant Research, 2012, vol. 125, no. 2, p. 223-233. ISSN 0918-9440.
    WEISS-SCHNEEWEISS, Hanna - BLOECH, Cordula - TURNER, Barbara - VILLASENOR, Jose L. - STUESSY, Tod F. - SCHNEEWEISS, Gerald M. THE PROMISCUOUS AND THE CHASTE: FREQUENT ALLOPOLYPLOID SPECIATION AND ITS GENOMIC CONSEQUENCES IN AMERICAN DAISIES (MELAMPODIUM SECT. MELAMPODIUM; ASTERACEAE). In Evolution, 2012, vol. 66, no. 1, p. 211-228. ISSN 0014-3820.
    TENNESSEN, J.A. - GOVINDARAJULU, R. - ASHMAN, T.L. - LISTON, A. Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps. In Genome Biology and Evolution, 2014, vol. 6, no. 12, p. 3295-3313. ISSN 1759-6653.
    VEKEMANS, X. - POUX, C. - GOUBET, P.M. - CASTRIC, V. The evolution of selfing from outcrossing ancestors in Brassicaceae: what have we learned from variation at the S-locus?. In Journal of Evolutionary Biology, 2014, vol. 27, no. 7, SI, p. 1372-1385. ISSN 1010-061X.
    BOMBLIES, K. - MADLUNG, A. Polyploidy in the Arabidopsis genus. In Chromosome Research, 2014, vol. 22, no. 2, SI, p. 117-134. ISSN 0967-3849.
    BESNARD, G. - EL BAKKALI, A. Sequence analysis of single-copy genes in two wild olive subspecies: nucleotide diversity and potential use for testing admixture. In Genome, 2014, vol. 57, no. 3, p. 145-153. ISSN 0831-2796.
    WOLF, D.E. - STEETS, J.A. - HOULISTON, G.J. - TAKEBAYASHI, N. Genome size variation and evolution in allotetraploid Arabidopsis kamchatica and its parents, A-lyrata and A-halleri. In AOB Plants, 2014, vol. 6. ISSN 2041-2851.
    DUFRESNE, F. - STIFT, M. - VERGILINO, R. - MABLE, B.K. Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools. In Molecular Ecology, 2014, vol. 23, no. 1, p. 40-69. ISSN 0962-1083.
    STOCKENHUBER, R. - ZOLLER, S. - SHIMIZU-INATSUGI, R. - GUGERLI, F. - SHIMIZU, K.K. - WIDMER, A. - FISCHER, M.C. Efficient Detection of Novel Nuclear Markers for Brassicaceae by Transcriptome Sequencing. In Plos One, 2015, vol. 10, no. 6. ISSN 1932-6203.
    LIANG, Q.L. - HU, X.X. - WU, G.L. - LIU, J.Q. Cryptic and repeated "allopolyploid" speciation within Allium przewalskianum Regel. (Alliaceae) from the Qinghai-Tibet Plateau. In Organisms Diversity & Evolution, 2015, vol. 15, no. 2, p. 265-276. ISSN 1439-6092.
    ARMSTRONG, J.J. - TAKEBAYASHI, N. - SFORMO, T. - WOLF, D.E. COLD TOLERANCE IN ARABIDOPSIS KAMCHATICA. In American Journal of Botany, 2015, vol. 102, no. 3, p. 439-448. ISSN 0002-9122.
    KOSUGI, A. - TAMARU, J. - GOTOU, K. - FURIHATA, H.Y. - SHIMIZU, A. - KAWABE, A. - HARADA, E. Metal accumulation by Arabidopsis halleri subsp gemmifera at a limestone mining site. In Australian Journal of Botany, 2015, vol. 63, no. 1-2, p. 134-140. ISSN 0067-1924.
    KADEREIT, J.W. The geography of hybrid speciation in plants. In Taxon, 2015, vol. 64, no. 4, p. 673-687. ISSN 0040-0262.
    KRAK, K. - VIT, P. - BELYAYEV, A. - DOUDA, J. - HREUSOVA, L. - MANDAK, B. Allopolyploid Origin of Chenopodium album s. str. (Chenopodiaceae): A Molecular and Cytogenetic Insight. In Plos One, 2016, vol. 11, no. 8. ISSN 1932-6203.
    LLOYD, A. - BOMBLIES, K. Meiosis in autopolyploid and allopolyploid Arabidopsis. In CURRENT OPINION IN PLANT BIOLOGY, 2016, vol. 30, p. 116-122. ISSN 1369-5266.
    KOSUGI, A. - NISHIZAWA, C. - KAWABE, A. - HARADA, E. Zinc accumulation and vegetation ecology in the allotetraploid, Arabidopsis kamchatica ssp kawasakiana. In Plant Biotechnology, 2016, vol. 33, no. 1, p. 33-37. ISSN 1342-4580.
    MATTILA, T.M. - AALTO, E.A. - TOIVAINEN, T. - NIITTYVUOPIO, A. - PILTONEN, S. - KUITTINEN, H. - SAVOLAINEN, O. Selection for population-specific adaptation shaped patterns of variation in the photoperiod pathway genes in Arabidopsis lyrata during post-glacial colonization. In Molecular Ecology, 2016, vol. 25, no. 2, p. 581-597. ISSN 0962-1083.
    HOHMANN, N. - KOCH, M.A. An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes. In BMC GENOMICS. ISSN 1471-2164, OCT 23 2017, vol. 18.
    FUJIWARA, T. - UEHARA, A. - IWASHINA, T. - MATSUMOTO, S. - CHANG, Y.H. - CHAO, Y.S. - WATANO, Y. Allotetraploid cryptic species in Asplenium normale in the Japanese Archipelago, detected by chemotaxonomic and multi-locus genotype approaches. In AMERICAN JOURNAL OF BOTANY. ISSN 0002-9122, SEP 2017, vol. 104, no. 9, p. 1390-1406.
    ZHU, W.S. - HU, B. - BECKER, C. - DOGAN, E.S. - BERENDZEN, K.W. - WEIGEL, D. - LIU, C. Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid. In GENOME BIOLOGY. ISSN 1474-760X, AUG 22 2017, vol. 18.
    KAMNEVA, O.K. - SYRING, J. - LISTON, A. - ROSENBERG, N.A. Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing. In BMC EVOLUTIONARY BIOLOGY. ISSN 1471-2148, AUG 4 2017, vol. 17.
    MONDRAGON-PALOMINO, M. - JOHN-ARPUTHARAJ, A. - PALLMANN, M. - DRESSELHAUS, T. Similarities between Reproductive and Immune Pistil Transcriptomes of Arabidopsis Species. In PLANT PHYSIOLOGY. ISSN 0032-0889, JUL 2017, vol. 174, no. 3, p. 1559-1575.
    LEY, A.C. - HARDY, O.J. Hybridization and Asymmetric Introgression after Secondary Contact in Two Tropical African Climber Species, Haumania danckelmaniana and Haumania liebrechtsiana (Marantaceae). In INTERNATIONAL JOURNAL OF PLANT SCIENCES. ISSN 1058-5893, JUL-AUG 2017, vol. 178, no. 6, p. 421-430.
    NOVIKOVA, P.Y. - TSUCHIMATSU, T. - SIMON, S. - NIZHYNSKA, V. - VORONIN, V. - BURNS, R. - FEDORENKO, O.M. - HOLM, S. - SALL, T. - PRAT, E. - MARANDE, W. - CASTRIC, V. - NORDBORG, M. Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica. In MOLECULAR BIOLOGY AND EVOLUTION. ISSN 0737-4038, APR 2017, vol. 34, no. 4, p. 957-968.
    LAFON-PLACETTE, C. - JOHANNESSEN, I.M. - HORNSLIEN, K.S. - ALI, M.F. - BJERKAN, K.N. - BRAMSIEPE, J. - GLOCKLE, B.M. - REBERNIG, C.A. - BRYSTING, A.K. - GRINI, P.E. - KOHLER, C. Endosperm-based hybridization barriers explain the pattern of gene flow between Arabidopsis lyrata and Arabidopsis arenosa in Central Europe. In PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. ISSN 0027-8424, FEB 7 2017, vol. 114, no. 6, p. E1027-E1035.
    LANGDON, Quinn K. - PERIS, David - KYLE, Brian - HITTINGER, Chris Todd. spplDer: A Species Identification Tool to Investigate Hybrid Genomes with High-Throughput Sequencing. In MOLECULAR BIOLOGY AND EVOLUTION. ISSN 0737-4038, NOV 2018, vol. 35, no. 11, p. 2835-2849.
    NOVIKOVA, Polina Yu. - HOHMANN, Nora - VAN DE PEER, Yves. Polyploid Arabidopsis species originated around recent glaciation maxima. In CURRENT OPINION IN PLANT BIOLOGY. ISSN 1369-5266, APR 2018, vol. 42, p. 8-15.
    KRYVOKHYZHA, Dmytro - SALCEDO, Adriana - ERIKSSON, Mimmi C. - DUAN, Tianlin - TAWARI, Nilesh - CHEN, Jun - GUERRINA, Maria - KREINER, Julia M. - KENT, Tyler V. - LAGERCRANTZ, Ulf - STINCHCOMBE, John R. - GLEMIN, Sylvain - WRIGHT, Stephen I. - LASCOUX, Martin. Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae). In PLOS GENETICS. ISSN 1553-7404, FEB 2019, vol. 15, no. 2.
    KOCH, Marcus A. The plant model system Arabidopsis set in an evolutionary systematic, and spatio-temporal context. In JOURNAL OF EXPERIMENTAL BOTANY. ISSN 0022-0957, JAN 1 2019, vol. 70, no. 1, p. 55-67.
    GERMAN, D. A. Nomenclatural notes on Cruciferae. In Turczaninowia. ISSN 15607259, 2019, vol. 22, no. 4, p. 210-219.
    ARMSTRONG, Jessica J. - TAKEBAYASHI, Naoki - WOLF, Diana E. Cold tolerance in the genus Arabidopsis. In AMERICAN JOURNAL OF BOTANY. ISSN 0002-9122, MAR 2020, vol. 107, no. 3, p. 489-497.
    CAVE-RADET, Armand - GIRAUD, Delphine - LIMA, Oscar - EL AMRANI, Abdelhak - AINOUCHE, Malika - SALMON, Armel. Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae). In PLANT MOLECULAR BIOLOGY. ISSN 0167-4412, JAN 2020, vol. 102, no. 1-2, p. 55-72.
    MATTILA, Tiina M. - LAENEN, Benjamin - SLOTTE, Tanja. Population Genomics of Transitions to Selfing in Brassicaceae Model Systems. In STATISTICAL POPULATION GENOMICS. ISSN 1064-3745, 2020, vol. 2090, no., pp. 269-287. Dostupné na: https://doi.org/10.1007/978-1-0716-0199-0_11.
    GORDON, S.P. - CONTRERAS-MOREIRA, B. - LEVY, J.J. - DJAMEI, A. - CZEDIK-EYSENBERG, A. - TARTAGLIO, V.S. - SESSION, A. - MARTIN, J. - CARTWRIGHT, A. - KATZ, A. - SINGAN, V.R. - GOLTSMAN, E. - BARRY, K. - VINH, H.D.T. - CHALHOUB, B. - DIAZ-PEREZ, A. - SANCHO, R. - LUSINSKA, J. - WOLNY, E. - NIBAU, C. - DOONAN, J.H. - MUR, L.A.J. - PLOTT, C. - JENKINS, J. - HAZEN, S.P. - LEE, S.J. - SHU, S.Q. - GOODSTEIN, D. - ROKHSAR, D. - SCHMUTZ, J. - HASTEROK, R. - CATALAN, P. - VOGEL, J.P. Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. In NATURE COMMUNICATIONS. ISSN 2041-1723, JUL 29 2020, vol. 11, no. 1.
    CHEN, Hongliang - GERMAN, Dmitry A. - AL-SHEHBAZ, Ihsan A. - YUE, Jipei - SUN, Hang. Phylogeny of Euclidieae (Brassicaceae) based on plastome and nuclear ribosomal DNA data. In MOLECULAR PHYLOGENETICS AND EVOLUTION. ISSN 1055-7903, 2020, vol. 153, no., pp. Dostupné na: https://doi.org/10.1016/j.ympev.2020.106940.
    GUO, Xinyi - MANDAKOVA, Terezie - TRACHTOVA, Karolina - OZUDOGRU, Baris - LIU, Jianquan - LYSAK, Martin A. Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe. In MOLECULAR BIOLOGY AND EVOLUTION. ISSN 0737-4038, MAY 2021, vol. 38, no. 5, p. 1695-1714. Available at: https://doi.org/10.1093/molbev/msaa327.
    MILOSAVLJEVIC, Stefan - KUO, Tony - DECARLI, Samuele - MOHN, Lucas - SESE, Jun - SHIMIZU, Kentaro K. - SHIMIZU-INATSUGI, Rie - ROBINSON, Mark D. ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw. In BMC Genomics, 2021-12-01, 22, 1, pp. Dostupné na: https://doi.org/10.1186/s12864-021-07845-2.
    SHIMIZU-INATSUGI, Rie - MILOSAVLJEVIC, Silvija - SHIMIZU, Kentaro K. - SCHAEPMAN-STRUB, Gabriela - TANOI, Keitaro - SATO, Yasuhiro. Metal accumulation and its effect on leaf herbivory in an allopolyploid species Arabidopsis kamchatica inherited from a diploid hyperaccumulator A. halleri. In Plant Species Biology, 2021-04-01, 36, 2, pp. 208-217. ISSN 0913557X. Dostupné na: https://doi.org/10.1111/1442-1984.12304.
    JIANG, Xinyu - SONG, Qingxin - YE, Wenxue - CHEN, Z. Jeffrey. Concerted genomic and epigenomic changes accompany stabilization of Arabidopsis allopolyploids. In NATURE ECOLOGY & EVOLUTION. ISSN 2397-334X, OCT 2021, vol. 5, no. 10, p. 1382-+. Available at: https://doi.org/10.1038/s41559-021-01523-y.
    NOVIKOVA, P.Y. - KOLESNIKOVA, U.K. - SCOTT, A.D. Ancestral self-compatibility facilitates the establishment of allopolyploids in Brassicaceae. In PLANT REPRODUCTION. ISSN 2194-7953, 2022 OCT 25 2022. Dostupné na: https://doi.org/10.1007/s00497-022-00451-6.
    SHIMIZU, K.K. Robustness and the generalist niche of polyploid species: Genome shock or gradual evolution?. In CURRENT OPINION IN PLANT BIOLOGY. ISSN 1369-5266, OCT 2022, vol. 69. Dostupné na: https://doi.org/10.1016/j.pbi.2022.102292.
    LANGE, C.B.A. - HAUSER, T.P. - DEICHMANN, V. - ORGAARD, M. Hybridization and complex evolution of iBarbarea vulgaris/i and related species (Brassicaceae). In MOLECULAR PHYLOGENETICS AND EVOLUTION. ISSN 1055-7903, APR 2022, vol. 169. Dostupné na: https://doi.org/10.1016/j.ympev.2022.107425.
    KategóriaADCA - Vedecké práce v zahraničných karentovaných časopisoch impaktovaných
    Kategória (od 2022)V3 - Vedecký výstup publikačnej činnosti z časopisu
    Typ výstupučlánok
    Rok vykazovania2009
    Registrované vWOS
    Registrované vSCOPUS
    Registrované vCCC
    DOI 10.1111/j.1365-294X.2009.04329.x
    článok

    článok

    Názov
    Pretreatment effect of antioxidants on fragmentation/qggregation of oxidised bovine serum albumin
    Autor
    rokCCIFIF Q (best)JCR Av Jour IF PercSJRSJR Q (best)CiteScore
    A
    rok vydaniarok metrikyIFIF Q (best)SJRSJR Q (best)
    200920085.325Q13.363Q1
Počet záznamov: 1  

  Tieto stránky využívajú súbory cookies, ktoré uľahčujú ich prezeranie. Ďalšie informácie o tom ako používame cookies.