Počet záznamov: 1  

Contribution of hydrogen bonds to protein stability

  1. NázovContribution of hydrogen bonds to protein stability
    Autor Pace C.N.
    Spoluautori Fu H.

    Fryar K.L.

    Landua J.

    Trevino S.R.

    Schell D.

    Thurlkill R.L.

    Imura S.

    Scholtz J.M.

    Gajiwala K.

    Ševčík Jozef SAVMOBIO - Ústav molekulárnej biológie SAV

    Urbániková Ľubica SAVMOBIO - Ústav molekulárnej biológie SAV    ORCID

    Myers J.K.

    Takano K.

    Hebert E.J.

    Shirley B.A.

    Grimsley G.R.

    Zdroj.dok. Protein Science. Vol. 23 (2014), p. 652–661
    Jazyk dok.eng - angličtina
    Druh dok.rozpis článkov z periodík (rbx)
    OhlasyMADAN, B. - SOKALINGAM, S. - RAGHUNATHAN, G. - LEE, S.G. In PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS. OCT 2014, vol. 82, no. 10, p. 2812-2822.
    LING, Y. - GAO, Y. - SHU, C. - ZHOU, Y. - ZHONG, W.Y. - XU, B. In RSC ADVANCES. 2015, vol. 5, no. 123, p. 101475-101479.
    SCHMIDPETER, P.A.M. - SCHMID, F.X. In JOURNAL OF BIOLOGICAL CHEMISTRY. JAN 30 2015, vol. 290, no. 5, p. 3021-3032.
    WANG, J.M. In PROTEIN SCIENCE. MAY 2015, vol. 24, no. 5, p. 661-669.
    SCHMIDPETER, P.A.M. - KOCH, J.R. - SCHMID, F.X. In BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS. OCT 2015, vol. 1850, no. 10, SI, p. 1973-1982.
    WIMMER, M.R. - WOODS, C.N. - ADAMCZAK, K.J. - GLASGOW, E.M. - NOVAK, W.R.P. - GRILLEY, D.P. - WEAVER, T.M. In PROTEIN SCIENCE. NOV 2015, vol. 24, no. 11, p. 1841-1855.
    Senthilkumar, B., Meshachpaul, D., Sethumadhavan, R., Rajasekaran, R. Frontiers in Biology 10 (2015), pp. 508-519
    HUGGINS, D.J. In JOURNAL OF STRUCTURAL BIOLOGY. DEC 2016, vol. 196, no. 3, p. 394-406.
    FEELEY, N.L. - BOTTOMLEY, S. - MUNYARD, K.A. In SMALL RUMINANT RESEARCH. OCT 2016, vol. 143, p. 29-34.
    MOMPEAN, M. - NOGALES, A. - EZQUERRA, T.A. - LAURENTS, D.V. In JOURNAL OF PHYSICAL CHEMISTRY LETTERS. MAY 19 2016, vol. 7, no. 10, p. 1859-1864.
    STOJANOSKI, V. - ADAMSKI, C.J. - HU, L.Y. - MEHTA, S.C. - SANKARAN, B. - ZWART, P. - PRASAD, B.V.V. - PALZKILL, T. In BIOCHEMISTRY. MAY 3 2016, vol. 55, no. 17, p. 2479-2490.
    DELLER, M.C. - KONG, L. - RUPP, B. In ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS. FEB 2016, vol. 72, 2, p. 72-95.
    ZHAO, X.Y. - ZHANG, G. - LU, F. - ZHANG, L.Q. - WU, S.Z. In RSC ADVANCES. 2016, vol. 6, no. 89, p. 85994-86005.
    NASTASIJEVIC, B. - MILOSEVIC, M. - JANJIC, G. - STANIC, V. - VASIC, V. In International Journal of Pharmacology. 2016, vol. 12, no. 4, p. 272-289.
    SKIBINSKI, D.O.F. - GHISELLI, F. - DIZ, A.P. - MILANI, L. - MULLINS, J.G.L. In GENOME BIOLOGY AND EVOLUTION. DEC 2017, vol. 9, no. 12, p. 3265-3281.
    CURTIDOR, H. - REYES, C. - BERMUDEZ, A. - VANEGAS, M. - VARELA, Y. - PATARROYO, M.E. In MOLECULES. DEC 2017, vol. 22, no. 12.
    ABU ALI, H. - KAMEL, S. - ABU SHAMMA, A. In APPLIED ORGANOMETALLIC CHEMISTRY. DEC 2017, vol. 31, no. 12.
    MITSUZAWA, S. - FUKUURA, M. - SHINKAWA, S. - KIMURA, K. - FURUTA, T. In SCIENTIFIC REPORTS. NOV 24 2017, vol. 7.
    SANCHEZ-SANZ, G. - TRUJILLO, C. - ALKORTA, I. - ELGUERO, J. In JOURNAL OF PHYSICAL CHEMISTRY A. NOV 23 2017, vol. 121, no. 46, p. 8995-9003.
    OROGUCHI, T. - NAKASAKO, M. In SCIENTIFIC REPORTS. NOV 20 2017, vol. 7.
    BROOM, A. - JACOBI, Z. - TRAINOR, K. - MEIERING, E.M. In JOURNAL OF BIOLOGICAL CHEMISTRY. SEP 1 2017, vol. 292, no. 35, p. 14349-14361.
    SCHRODER, H.V. - WOLLSCHLAGER, J.M. - SCHALLEY, C.A. In CHEMICAL COMMUNICATIONS. AUG 25 2017, vol. 53, no. 66, p. 9218-9221.
    DURELL, S.R. - BEN-NAIM, A. In BIOPOLYMERS. AUG 2017, vol. 107, no. 8.
    KASZNEL, A.J. - ZHANG, Y.T. - HAI, Y. - CHENOWETH, D.M. In JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. JUL 19 2017, vol. 139, no. 28, p. 9427-9430.
    ROCKLIN, G.J. - CHIDYAUSIKU, T.M. - GORESHNIK, I. - FORD, A. - HOULISTON, S. - LEMAK, A. - CARTER, L. - RAVICHANDRAN, R. - MULLIGAN, V.K. - CHEVALIER, A. - ARROWSMITH, C.H. - BAKER, D. In SCIENCE. JUL 14 2017, vol. 357, no. 6347, SI, p. 168-174.
    SNEHA, P. - THIRUMAL, D.K. - TANWAR, H. - SIVA, R. - DOSS, C.G.P. - ZAYED, H. In JOURNAL OF CELLULAR BIOCHEMISTRY. JUL 2017, vol. 118, no. 7, p. 1900-1910.
    WANG, J.M. In PROTEIN SCIENCE. MAY 2017, vol. 26, no. 5, p. 1012-1023.
    SUGRUE, E. - SCOTT, C. - JACKSON, C.J. In ORGANIC & BIOMOLECULAR CHEMISTRY. JAN 28 2017, vol. 15, no. 4, p. 937-946.
    ALI, S.K. - SNEHA, P. - CHRISTY, J.P. - ZAYED, H. - DOSS, C.G.P. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. 2017, vol. 35, no. 12, p. 2714-2724.
    TANWAR, H. - SNEHA, P. - KUMAR, D.T. - SIVA, R. - WALTER, C.E.J. - DOSS, C.G.P. In STRESS AND INFLAMMATION IN DISORDERS. 2017, vol. 108, p. 105-125.
    KUMAR, D.T. - DOSS, C.G.P. - SNEHA, P. - TAYUBI, I.A. - SIVA, R. - CHAKRABORTY, C. - MAGESH, R. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. 2017, vol. 35, no. 5, p. 917-928.
    LONARDI, A. - OBORSKY, P. - HUNENBERGER, P.H. In HELVETICA CHIMICA ACTA. JAN 2017, vol. 100, no. 1.
    NARANG, S.S. - SHUAIB, S. - GOYAL, D. - GOYAL, B. Assessing the effect of D59P mutation in the DE loop region in amyloid aggregation propensity of 2-microglobulin: A molecular dynamics simulation study. In JOURNAL OF CELLULAR BIOCHEMISTRY. JAN 2018, vol. 119, no. 1, p. 782-792.
    KUMAR, D.T. - SNEHA, P. - UPPIN, J. - USHA, S. - DOSS, C.G.P. Investigating the Influence of Hotspot Mutations in Protein-Protein Interaction of IDH1 Homodimer Protein: A Computational Approach. In PROTEIN-PROTEIN INTERACTIONS IN HUMAN DISEASE, PT B. 2018, vol. 111, B, p. 243-261.
    KHAN, M.T. - REHAMAN, A.U. - JUNAID, M. - MALIK, S.I. - WEI, D.Q. Insight into novel clinical mutants of RpsA-S324F, E325K, and G341R of Mycobacterium tuberculosis associated with pyrazinamide resistance. In COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 2018, vol. 16, p. 379-387.
    NEIRA, J.L. - HORNOS, F. - COZZA, C. - CAMARA-ARTIGAS, A. - ABIAN, O. - VELAZQUEZ-CAMPOY, A. The histidine phosphocarrier protein, HPr, binds to the highly thermostable regulator of sigma D protein, Rsd, and its isolated helical fragments. In ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. FEB 1 2018, vol. 639, p. 26-37.
    ARULEBA, R.T. - ADEKIYA, T.A. - OYINLOYE, B.E. - KAPPO, A.P. Structural Studies of Predicted Ligand Binding Sites and Molecular Docking Analysis of Slc2a4 as a Therapeutic Target for the Treatment of Cancer. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. FEB 2018, vol. 19, no. 2.
    SANCHEZ-SANZ, G. - TRUJILLO, C. Improvement of Anion Transport Systems by Modulation of Chalcogen Interactions: The influence of solvent. In JOURNAL OF PHYSICAL CHEMISTRY A. FEB 8 2018, vol. 122, no. 5, p. 1369-1377.
    ROBINSON, A.C. - SCHLESSMAN, J.L. - GARCIA-MORENO, E.B. Dielectric Properties of a Protein Probed by Reversal of a Buried Ion Pair. In JOURNAL OF PHYSICAL CHEMISTRY B. MAR 8 2018, vol. 122, no. 9, p. 2516-2524.
    SEIFI, M. - WALTER, M.A. Accurate prediction of functional, structural, and stability changes in PITX2 mutations using in silico bioinformatics algorithms. In PLOS ONE. APR 17 2018, vol. 13, no. 4.
    JAOUADI, A. - TABEBI, M. - ABDELHEDI, F. - ABID, D. - KAMOUN, F. - CHABCHOUB, I. - MAATOUG, S. - DOUKALI, H. - BELGHUITH, N. - KSENTINI, M.A. - KESKES, L.A. - TRIKI, C. - HACHICHA, M. - KAMOUN, S. - KAMOUN, H. A novel TBX1 missense mutation in patients with syndromic congenital heart defects. In BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS. MAY 15 2018, vol. 499, no. 3, p. 563-569.
    CHOPRA, N. - KAUR, J. Point mutation Arg153-His at surface of Bacillus lipase contributing towards increased thermostability and ester synthesis: insight into molecular network. In MOLECULAR AND CELLULAR BIOCHEMISTRY. JUN 2018, vol. 443, no. 1-2, p. 159-168.
    ALI, A. - AHMED, S. Recent Advances in Edible Polymer Based Hydrogels as a Sustainable Alternative to Conventional Polymers. In JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. JUL 11 2018, vol. 66, no. 27, p. 6940-6967.
    JONG, K. - ANSARI, N. - GRISANTI, L. - HASSANALI, A. Understanding the quantum mechanical properties of hydrogen bonds in solvated biomolecules from cluster calculations. In JOURNAL OF MOLECULAR LIQUIDS. AUG 1 2018, vol. 263, p. 501-509.
    HASSAN, M. - SHAHZADI, S. - ALASHWAL, H. - ZAKI, N. - SEO, S.Y. - MOUSTAFA, A. Exploring the mechanistic insights of Cas scaffolding protein family member 4 with protein tyrosine kinase 2 in Alzheimer's disease by evaluating protein interactions through molecular docking and dynamic simulations. In NEUROLOGICAL SCIENCES. AUG 2018, vol. 39, no. 8, p. 1361-1374.
    HAN, Y.T. - HU, J.L. - JIANG, L. Collagen skin, a water-sensitive shape memory material. In JOURNAL OF MATERIALS CHEMISTRY B. AUG 21 2018, vol. 6, no. 31, p. 5144-5152.
    KUMAR, D.T. - EMERALD, L.J. - DOSS, C.G.P. - SNEHA, P. - SIVA, R. - JEBARAJ, W.C.E. - ZAYED, H. Computational approach to unravel the impact of missense mutations of proteins (D2HGDH and IDH2) causing D-2-hydroxyglutaric aciduria 2. In METABOLIC BRAIN DISEASE. OCT 2018, vol. 33, no. 5, p. 1699-1710.
    MELTON, S.D. - CHENOWETH, D.M. Variation in the Yaa position of collagen peptides containing azaGlycine. In CHEMICAL COMMUNICATIONS. OCT 28 2018, vol. 54, no. 84, p. 11937-11940.
    ABARNA, R. - DUTTA, D. - SNEHA, P. - DOSS, C.G.P. - ANBALAGAN, M. Identification of novel heterozygous Apex 1 gene variant (Glu87Gln) in patients withhead and neck cancer of Indian origin. In JOURNAL OF CELLULAR BIOCHEMISTRY. NOV 2018, vol. 119, no. 11, p. 8851-8861.
    SHAIK, N.A. - AWAN, Z.A. - VERMA, P.K. - ELANGO, R. - BANAGANAPALLI, B. Protein phenotype diagnosis of autosomal dominant calmodulin mutations causing irregular heart rhythms. In JOURNAL OF CELLULAR BIOCHEMISTRY. NOV 2018, vol. 119, no. 10, p. 8233-8248.
    LIN, X.H. - JIANG, X.Y. - WU, W. - MO, Y.R. Induction, Resonance, and Secondary Electrostatic Interaction on Hydrogen Bonding in the Association of Amides and Imides. In JOURNAL OF ORGANIC CHEMISTRY. NOV 2 2018, vol. 83, no. 21, p. 13446-13453.
    KUMAR, D.T. - ELDOUS, H.G. - MAHGOUB, Z.A. - DOSS, C.G.P. - ZAYED, H. Computational modelling approaches as a potential platform to understand the molecular genetics association between Parkinson's and Gaucher diseases. In METABOLIC BRAIN DISEASE. DEC 2018, vol. 33, no. 6, p. 1835-1847.
    YANG, I. - PARK, D.H. - CHOI, W.S. - AHN, D.U. - OH, S.C. - HAN, G.S. Adhesive and curing properties of chicken feather/blood-based adhesives for the fabrication of medium-density fiberboards. In JOURNAL OF ADHESION. DEC 6 2018, vol. 94, no. 14, p. 1137-1154.
    TAWEECHEEP, P. - NALOKA, K. - MATSUTANI, M. - YAKUSHI, T. - MATSUSHITA, K. - THEERAGOOL, G. Superfine bacterial nanocellulose produced by reverse mutations in the bcsC gene during adaptive breeding of Komagataeibacter oboediens. In CARBOHYDRATE POLYMERS. ISSN 0144-8617, DEC 15 2019, vol. 226.
    BITTRICH, S. - SCHROEDER, M. - LABUDDE, D. StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map. In SCIENTIFIC REPORTS. ISSN 2045-2322, DEC 6 2019, vol. 9.
    BIOK, N.A. - PASSOW, A.D. - WANG, C.X. - BINGMAN, C.A. - ABBOTT, N.L. - GELLMAN, S.H. Retention of Coiled-Coil Dimer Formation in the Absence of Ion Pairing at Positions Flanking the Hydrophobic Core. In BIOCHEMISTRY. ISSN 0006-2960, DEC 3 2019, vol. 58, no. 48, p. 4821-4826.
    KALHOR, H.R. - JABBARY, M. Investigating Reliable Conditions for HEWL as an Amyloid Model in Computational Studies and Drug Interactions. In JOURNAL OF CHEMICAL INFORMATION AND MODELING. ISSN 1549-9596, DEC 2019, vol. 59, no. 12, p. 5218-5229.
    ISLAM, M.J. - KHAN, A.M. - PARVES, M.R. - HOSSAIN, M.N. - HALIM, M.A. Prediction of Deleterious Non-synonymous SNPs of Human STK11 Gene by Combining Algorithms, Molecular Docking, and Molecular Dynamics Simulation. In SCIENTIFIC REPORTS. ISSN 2045-2322, NOV 11 2019, vol. 9.
    TSUBOUCHI, K. - TAKADA, Y. Effects of the substituted amino acid residues on the thermal properties of monomeric isocitrate dehydrogenases from a psychrophilic bacterium, Psychromonas marina, and a mesophilic bacterium, Azotobacter vinelandii. In EXTREMOPHILES. ISSN 1431-0651, NOV 2019, vol. 23, no. 6, p. 809-820.
    CRAMER, J. - SAGER, C.P. - ERNST, B. Hydroxyl Groups in Synthetic and Natural-Product-Derived Therapeutics: A Perspective on a Common Functional Group. In JOURNAL OF MEDICINAL CHEMISTRY. ISSN 0022-2623, OCT 24 2019, vol. 62, no. 20, p. 8915-8930.
    PRIYADHARSHINI, J.C. - KUMAR, D.T. - SNEHA, P. - SIVA, R. - JEBARAJ, W.C.E. - DOSS, C.G.P. - ZAYED, H. An integrative bioinformatics pipeline to demonstrate the alteration of the interaction between the ALDH2*2 allele with NAD(+) and Disulfiram. In JOURNAL OF CELLULAR BIOCHEMISTRY. ISSN 0730-2312, OCT 2019, vol. 120, no. 10, p. 17030-17041.
    SHUAIB, S. - NARANG, S.S. - GOYAL, D. - GOYAL, B. Computational design and evaluation of beta-sheet breaker peptides for destabilizing Alzheimer's amyloid-beta(42) protofibrils. In JOURNAL OF CELLULAR BIOCHEMISTRY. ISSN 0730-2312, OCT 2019, vol. 120, no. 10, p. 17935-17950.
    MAJEWSKI, M. - RUIZ-CARMONA, S. - BARRIL, X. An investigation of structural stability in protein-ligand complexes reveals the balance between order and disorder. In COMMUNICATIONS CHEMISTRY. ISSN 2399-3669, SEP 17 2019, vol. 2.
    BAERISWYL, S. - JAVOR, S. - STOCKER, A. - DARBRE, T. - REYMOND, J.L. X-Ray Crystal Structure of a Second-Generation Peptide Dendrimer in Complex with Pseudomonas aeruginosa Lectin LecB. In HELVETICA CHIMICA ACTA. ISSN 0018-019X, SEP 2019, vol. 102, no. 9.
    BEN GEOFFREY, A.S. - PRASANA, J.C. - MUTHU, S. - ABRAHAM, C.S. - DAVID, H.A. Structure-Activity relationship studies of two dietary flavonoids and their Nitric Oxide Synthase inhibition activity by spectroscopic and quantum/classical computational techniques. In JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY. ISSN 0219-6336, SEP 2019, vol. 18, no. 6.
    SARKAR, B. - SIDDIQUI, Z. - NGUYEN, P.K. - DUBE, N. - FU, W.Y. - PARK, S. - JAISINGHANI, S. - PAUL, R. - KOZUCH, S.D. - DENG, D.Y. - IGLESIAS-MONTORO, P. - LI, M.Y. - SABATINO, D. - PERLIN, D.S. - ZHANG, W. - MONDAL, J. - KUMAR, V.A. Membrane-Disrupting Nanofibrous Peptide Hydrogels. In ACS BIOMATERIALS SCIENCE & ENGINEERING. ISSN 2373-9878, SEP 2019, vol. 5, no. 9, p. 4657-4670.
    ENDOW, S.A. - MARSZALEK, P.E. An estimate to the first approximation of microtubule rupture force. In EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS. ISSN 0175-7571, SEP 2019, vol. 48, no. 6, p. 569-577.
    AUSTERBERRY, J.I. - THISTLETHWAITE, A. - FISHER, K. - GOLOVANOV, A.P. - PLUEN, A. - ESFANDIARY, R. - VAN DER WALLE, C.F. - WARWICKER, J. - DERRICK, J.P. - CURTIS, R. Arginine to Lysine Mutations Increase the Aggregation Stability of a Single-Chain Variable Fragment through Unfolded-State Interactions. In BIOCHEMISTRY. ISSN 0006-2960, AUG 13 2019, vol. 58, no. 32, p. 3413-3421.
    HAN, M.J. - LIAO, S.H. - PENG, X. - ZHOU, X.Q. - CHEN, Q. - LIU, H.Y. Selection and analyses of variants of a designed protein suggest importance of hydrophobicity of partially buried sidechains for protein stability at high temperatures. In PROTEIN SCIENCE. ISSN 0961-8368, AUG 2019, vol. 28, no. 8, p. 1437-1447.
    SARANYA, V. - SHANKAR, R. - VIJAYAKUMAR, S. Structural exploration of viral matrix protein 40 interaction with the transition metal ions (Ag+ and Cu2+). In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. ISSN 0739-1102, JUL 24 2019, vol. 37, no. 11, p. 2875-2896.
    BECKETT, D. - EL-BABA, T.J. - GILBERT, K. - CLEMMER, D.E. - RAGHAVACHARI, K. Untangling Hydrogen Bond Networks with Ion Mobility Spectrometry and Quantum Chemical Calculations: A Case Study on H(+)XPGG. In JOURNAL OF PHYSICAL CHEMISTRY B. ISSN 1520-6106, JUL 11 2019, vol. 123, no. 27, p. 5730-5741.
    NIU, R.J. - ZHENG, Q.C. - ZHANG, H.X. Molecular dynamics simulations study of influence of Tyr422Ala mutation on transcriptional enhancer activation domain 4 (TEAD4) and transcription co-activators complexes. In JOURNAL OF THEORETICAL BIOLOGY. ISSN 0022-5193, JUL 7 2019, vol. 472, p. 27-35.
    BEN GEOFFREY, A.S. - PRASANA, J.C. - MUTHU, S. - ABRAHAM, C.S. - DAVID, H.A. Spectroscopic and quantum/classical mechanics based computational studies to compare the ability of Andrographolide and its derivative to inhibit Nitric Oxide Synthase. In SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY. ISSN 1386-1425, JUL 5 2019, vol. 218, p. 374-387.
    HASSAN, M. - SHAHZADI, S. - RAZA, H. - ABBASI, M.A. - ALASHWAL, H. - ZAKI, N. - MOUSTAFA, A.A. - SEO, S.Y. Computational investigation of mechanistic insights of A beta 42 interactions against extracellular domain of nAChR alpha 7 in Alzheimer's disease. In INTERNATIONAL JOURNAL OF NEUROSCIENCE. ISSN 0020-7454, JUL 3 2019, vol. 129, no. 7, p. 666-680.
    DE OLIVEIRA, A.A. - FAUSTINO, J. - DE LIMA, M.E. - MENEZES, R. - NUNES, K.P. Unveiling the Interplay between the TLR4/MD2 Complex and HSP70 in the Human Cardiovascular System: A Computational Approach. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. JUL 1 2019, vol. 20, no. 13.
    FRAGA, J.S. - SARKANY, Z. - SILVA, A. - CORREIA, I. - PEREIRA, P.J.B. - MACEDO-RIBEIRO, S. Genetic code ambiguity modulates the activity of a C. albicans MAP kinase linked to cell wall remodeling. In BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. ISSN 1570-9639, JUN 2019, vol. 1867, no. 6, p. 654-661.
    AGRAHARI, A.K. - DOSS, G.P.C. - SIVA, R. - MAGESH, R. - ZAYED, H. Molecular insights of the G2019S substitution in LRRK2 kinase domain associated with Parkinson's disease: A molecular dynamics simulation approach. In JOURNAL OF THEORETICAL BIOLOGY. ISSN 0022-5193, MAY 21 2019, vol. 469, p. 163-171.
    KHAN, M.T. - KHAN, A. - REHMAN, A.U. - WANG, Y.J. - AKHTAR, K. - MALIK, S.I. - WEI, D.Q. Structural and free energy landscape of novel mutations in ribosomal protein S1 (rpsA) associated with pyrazinamide resistance. In SCIENTIFIC REPORTS. ISSN 2045-2322, MAY 16 2019, vol. 9.
    ISHAK, S.N.H. - MASOMIAN, M. - KAMARUDIN, N.H.A. - ALI, M.S.M. - LEOW, T.C. - ABD RAHMAN, R.N.Z.R. Changes of Thermostability, Organic Solvent, and pH Stability in Geobacillus zalihae HT1 and Its Mutant by Calcium Ion. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. MAY 2 2019, vol. 20, no. 10.
    SANCHEZ-SANZ, G. - TRUJILLO, C. Cyclohexane-Based Scaffold Molecules Acting as Anion Transport, Anionophores, via Noncovalent Interactions. In JOURNAL OF CHEMICAL INFORMATION AND MODELING. ISSN 1549-9596, MAY 2019, vol. 59, no. 5, SI, p. 2212-2217.
    KHAN, M.T. - JUNAID, M. - MAO, X.Y. - WANG, Y.J. - HUSSAIN, A. - MALIK, S.I. - WEI, D.Q. Pyrazinamide resistance and mutations L19R, R140H, and E144K in Pyrazinamidase of Mycobacterium tuberculosis. In JOURNAL OF CELLULAR BIOCHEMISTRY. ISSN 0730-2312, MAY 2019, vol. 120, no. 5, p. 7154-7166.
    KUMAR, D.T. - NIAZULLAH, M.U. - TASNEEM, S. - JUDITH, E. - SUSMITA, B. - DOSS, C.G.P. - SELVARAJAN, E. - ZAYED, H. A computational method to characterize the missense mutations in the catalytic domain of GAA protein causing Pompe disease. In JOURNAL OF CELLULAR BIOCHEMISTRY. ISSN 0730-2312, MAR 2019, vol. 120, no. 3, p. 3491-3505.
    NARVAEZ, W.E.V. - JIMENEZ, E.I. - CANTU-REYES, M. - YATSIMIRSKY, A.K. - HERNANDEZ-RODRIGUEZ, M. - ROCHA-RINZA, T. Stability of doubly and triply H-bonded complexes governed by acidity-basicity relationships. In CHEMICAL COMMUNICATIONS. ISSN 1359-7345, FEB 7 2019, vol. 55, no. 11, p. 1556-1559.
    HAN, Y.T. - HU, J.L. - JIAN, L. Smart behavior of collagen skin: water-sensitive shape memory. In MATERIALS TODAY-PROCEEDINGS. ISSN 2214-7853, 2019, vol. 16, 3, SI, p. 1415-1422.
    KUMAR, D.T. - IYER, S. - CHRISTY, J.P. - SIVA, R. - TAYUBI, I.A. - DOSS, C.G.P. - ZAYED, H. A comparative computational approach toward pharmacological chaperones (NN-DNJ and ambroxol) on N370S and L444P mutations causing Gaucher's disease. In MOLECULAR CHAPERONES IN HUMAN DISORDERS. ISSN 1876-1623, 2019, vol. 114, p. 315-339.
    SUSANTO, H. - LISTYORINI, D. - TAUFIQ, A. - KHARISMA, V.D. - HANDAYA, A.Y. - PERTIWI, M.P. - NISA, S.A.R. - KHASNA, E.N. Betatrophin/Lipasin/C19orf80: In Silico Approach for Protein-Based Biomaterial Marker in Metabolic Syndrome and Colorectal Cancer Through Computational-Based Study. In INTERNATIONAL CONFERENCE ON CONDENSED MATTERS AND ADVANCED MATERIALS (IC2MAM 2018). ISSN 1757-8981, 2019, vol. 515.
    RAZA, Sana - DHASMANA, Anupam - BHATT, Madan Lal Brahma - LOHANI, Mohtashim - ARIF, Jamal M. Molecular mechanism of cancer susceptibility associated with Fok1 single nucleotide polymorphism of VDR in relation to breast cancer. In Asian Pacific Journal of Cancer Prevention. ISSN 15137368, 2019-01-01, 20, 1, pp. 199-206.
    SCHMIDPETER, P.A.M. - RHEINBERGER, J. - NIMIGEAN, C.M. Prolyl isomerization controls activation kinetics of a cyclic nucleotide-gated ion channel. In NATURE COMMUNICATIONS. ISSN 2041-1723, DEC 16 2020, vol. 11, no. 1.
    OAKLEY, S.S. - MAINA, M.B. - MARSHALL, K.E. - AL-HILALY, Y.K. - HARRINGTON, C.R. - WISCHIK, C.M. - SERPELL, L.C. Tau Filament Self-Assembly and Structure: Tau as a Therapeutic Target. In FRONTIERS IN NEUROLOGY. ISSN 1664-2295, NOV 12 2020, vol. 11.
    KUMAR, R. - JAYARAMAN, M. - RAMADAS, K. - CHANDRASEKARAN, A. Insight into the structural and functional analysis of the impact of missense mutation on cytochrome P450 oxidoreductase. In JOURNAL OF MOLECULAR GRAPHICS & MODELLING. ISSN 1093-3263, NOV 2020, vol. 100.
    LAHA, S. - CHAKRABORTY, J. - DAS, S. - MANNA, S.K. - BISWAS, S. - CHATTERJEE, R. Characterizations of SARS-CoV-2 mutational profile, spike protein stability and viral transmission. In INFECTION GENETICS AND EVOLUTION. ISSN 1567-1348, NOV 2020, vol. 85.
    MANYUMWA, C.V. - EMAMEH, R.Z. - BISHOP, O.T. Alpha-Carbonic Anhydrases from Hydrothermal Vent Sources as Potential Carbon Dioxide Sequestration Agents: In Silico Sequence, Structure and Dynamics Analyses. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. NOV 2020, vol. 21, no. 21.
    ADDAI, F.P. - WANG, T.T. - KOSIBA, A.A. - LIN, F. - ZHEN, R. - CHEN, D.F. - GU, J. - SHI, H.F. - ZHOU, Y. Integration of elastin-like polypeptide fusion system into the expression and purification of Lactobacillus sp. B164 beta-galactosidase for lactose hydrolysis. In BIORESOURCE TECHNOLOGY. ISSN 0960-8524, SEP 2020, vol. 311.
    AHMAD, N.N. - KAMARUDIN, N.H.A. - LEOW, A.T.C. - ABD RAHMAN, R.N.Z.R. The Role of Surface Exposed Lysine in Conformational Stability and Functional Properties of Lipase fromStaphylococcusFamily. In MOLECULES. SEP 2020, vol. 25, no. 17.
    SARANYA, V. - MARY, P.V. - VIJAYAKUMAR, S. - SHANKAR, R. The hazardous effects of the environmental toxic gases on amyloid beta-peptide aggregation: A theoretical perspective. In BIOPHYSICAL CHEMISTRY. ISSN 0301-4622, AUG 2020, vol. 263.
    XU, S. - GUO, J.F. - HUANG, J.J. - ZHANG, G. - TAN, Y.H. Effect of Two Dental Restorative Materials on Adhesion and Molecular Structure of Oral Bacteria. In JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY. ISSN 1533-4880, AUG 2020, vol. 20, no. 8, p. 4643-4647.
    ZHANG, H.K. - ZHAO, Z. - TURLEY, A.T. - WANG, L. - MCGONIGAL, P.R. - TU, Y.J. - LI, Y.Y. - WANG, Z.Y. - KWOK, R.T.K. - LAM, J.W.Y. - TANG, B.Z. Aggregate Science: From Structures to Properties. In ADVANCED MATERIALS. ISSN 0935-9648, SEP 2020, vol. 32, no. 36.
    SANTOS, G.F.N. - CARVALHO, L.C. - OLIVEIRA, D.A.S. - DO REGO, D.G. - BUENO, M.A. - DE OLIVEIRA, B.G. The definitive challenge of forming uncommon pseudo-pi center dot center dot center dot H-F and C center dot center dot center dot H-F hydrogen bonds on cyclic and cubic nonpolar hydrocarbons. In JOURNAL OF PHYSICAL ORGANIC CHEMISTRY. ISSN 0894-3230, NOV 2020, vol. 33, no. 11.
    NWAGU, T.N. - AOYAGI, H. - OKOLO, B. - MONEKE, A. - YOSHIDA, S. Citraconylation and maleylation on the catalytic and thermodynamic properties of raw starch saccharifying amylase from Aspergillus carbonarius. In HELIYON. ISSN 2405-8440, JUL 2020, vol. 6, no. 7.
    TIMSON, D.J. The roles and applications of chaotropes and kosmotropes in industrial fermentation processes. In WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY. ISSN 0959-3993, JUN 8 2020, vol. 36, no. 6.
    MAZMANIAN, K. - SARGSYAN, K. - LIM, C. How the Local Environment of Functional Sites Regulates Protein Function. In JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. ISSN 0002-7863, JUN 3 2020, vol. 142, no. 22, p. 9861-9871.
    KAMIS, S.L. - YEE, T.M. - AKASAKA, H. - OHTAKE, N. Wear behavior of non-hydrogenated and hydrogenated DLC films under protein lubricated condition. In JURNAL TRIBOLOGI. ISSN 2289-7232, JUN 2020, vol. 25, p. 136-145.
    REZAEIAN-MARJANI, L. - IMANI, M. - JALIANI, H.Z. Enhancement of Pharmaceutical Urate Oxidase Thermostability by Rational Design of De Novo Disulfide Bridge. In IRANIAN JOURNAL OF BIOTECHNOLOGY. ISSN 1728-3043, SUM 2020, vol. 18, no. 3, p. 1-11.
    YANG, S.T. - GUO, Q. - WU, F.L. - CHU, Y.Q. - WANG, Y.H. - ZHOU, M.F. - DING, C.F. Investigation of noncovalent interactions between peptides with potential intrinsic sequence patterns by mass spectrometry. In RAPID COMMUNICATIONS IN MASS SPECTROMETRY. ISSN 0951-4198, MAY 30 2020, vol. 34, no. 10.
    PANG, W.C. - RAMLI, A.N.M. - HAMID, A.A.A. Comparative modelling studies of fruit bromelain using molecular dynamics simulation. In JOURNAL OF MOLECULAR MODELING. ISSN 1610-2940, MAY 16 2020, vol. 26, no. 6.
    SURESH, R. - SUBRAMANIAM, V. Molecular dynamics simulation involved in expounding the activation of adrenoceptors by sympathetic nervous system signaling. In STRUCTURAL CHEMISTRY. ISSN 1040-0400, OCT 2020, vol. 31, no. 5, p. 1869-1885.
    ZHANG, X. - XU, N. - LI, J.L. - MA, Z.P. - WEI, L. - LIU, Q.D. - LIU, J. Engineering of L-glutamate oxidase as the whole-cell biocatalyst for the improvement of alpha-ketoglutarate production. In ENZYME AND MICROBIAL TECHNOLOGY. ISSN 0141-0229, MAY 2020, vol. 136.
    DUTTA, J. - SAHOO, D.K. - JENA, S. - TULSIYAN, K.D. - BISWAL, H.S. Non-covalent interactions with inverted carbon: a carbo-hydrogen bond or a new type of hydrogen bond?. In PHYSICAL CHEMISTRY CHEMICAL PHYSICS. ISSN 1463-9076, APR 28 2020, vol. 22, no. 16, p. 8988-8997.
    LOPEZ-CHAVEZ, E. - PEREZ-HERNANDEZ, G. - APARICIO, F. - ALAS, S.J. On the Thermal Stability of O-6-Methylguanine-DNA Methyltransferase from Archaeon Pyrococcus kodakaraensis by Molecular Dynamics Simulations. In JOURNAL OF CHEMICAL INFORMATION AND MODELING. ISSN 1549-9596, APR 27 2020, vol. 60, no. 4, p. 2138-2154.
    FRIEDRICH, D. - PERODEAU, J. - NIEUWKOOP, A.J. - OSCHKINAT, H. MAS NMR detection of hydrogen bonds for protein secondary structure characterization. In JOURNAL OF BIOMOLECULAR NMR. ISSN 0925-2738, MAY 2020, vol. 74, no. 4-5, p. 247-256.
    PEREIRA, G.R.C. - TAVARES, G.D.B. - DE FREITAS, M.C. - DE MESQUITA, J.F. In silico analysis of the tryptophan hydroxylase 2 (TPH2) protein variants related to psychiatric disorders. In PLOS ONE. ISSN 1932-6203, MAR 2 2020, vol. 15, no. 3.
    SINGH, D. - SONI, S. - KHAN, S. - SARANGI, A.N. - YENNAMALLI, R.M. - AGGARWAL, R. - VEERAPU, N.S. Genome-Wide Mutagenesis of Hepatitis C Virus Reveals Ability of Genome To Overcome Detrimental Mutations. In JOURNAL OF VIROLOGY. ISSN 0022-538X, FEB 2020, vol. 94, no. 3.
    SWAIN, L.L. - MISHRA, C. - SAHOO, S.S. - NAYAK, G. - PRADHAN, S.K. - MISHRA, S.R. - DIGE, M. An in vivo and in silico analysis of novel variation in TMBIM6 gene affecting cardiopulmonary traits of Indian goats. In JOURNAL OF THERMAL BIOLOGY. ISSN 0306-4565, FEB 2020, vol. 88.
    GEORGIEV, D.D. - GLAZEBROOK, J.F. Quantum transport and utilization of free energy in protein alpha-helices. In QUANTUM BOUNDARIES OF LIFE. ISSN 0065-3276, 2020, vol. 82, p. 253-300.
    GHOSH, A. - YAN, H. Stability Analysis at Key Positions of EGFR Related to Non-small Cell Lung Cancer. In CURRENT BIOINFORMATICS. ISSN 1574-8936, 2020, vol. 15, no. 3, p. 260-267.
    KHAN, Z.A. - MISHRA, C. - JYOTIRANJAN, T. In silico analysis of caprine superoxide dismutase 1 (SOD1) gene. In GENOMICS. ISSN 0888-7543, JAN 2020, vol. 112, no. 1, p. 212-217.
    KUMAR, S.U. - KUMAR, D.T. - MANDAL, P.D. - SANKAR, S. - HALDAR, R. - KAMARAJ, B. - WALTER, C.E.J. - SIVA, R. - DOSS, C.G.P. - ZAYED, H. Comprehensive in silico screening and molecular dynamics studies of missense mutations in Sjogren-Larsson syndrome associated with the ALDH3A2 gene. In INFLAMMATORY DISORDERS - PT B. ISSN 1876-1623, 2020, vol. 120, p. 349-377.
    PUTRA, W.E. - KHARISMA, V.D. - SUSANTO, H. The Exploration of Medicinal Plants' Phytochemical Compounds as Potential Inhibitor Against Human alpha-3 Nicotinic Acetylcholine Receptors: The Insight from Computational Study. In INTERNATIONAL CONFERENCE ON LIFE SCIENCE AND TECHNOLOGY (ICOLIST). ISSN 0094-243X, 2020, vol. 2231.
    SCHWIETERS, C.D. - BERMEJO, G.A. - CLORE, G.M. A three-dimensional potential of mean force to improve backbone and sidechain hydrogen bond geometry in Xplor-NIH protein structure determination. In PROTEIN SCIENCE. ISSN 0961-8368, JAN 2020, vol. 29, no. 1, SI, p. 100-110.
    NARANG, S.S. - SHUAIB, S. - GOYA, D. - GOYAL, B. In silico-guided identification of potential inhibitors against beta(2)m aggregation in dialysis-related amyloidosis. In JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. ISSN 0739-1102, SEP 1 2020, vol. 38, no. 13, p. 3927-3941.
    ARNITTALI, M. - RISSANOU, A.N. - HARMANDARIS, V. Structure Of Biomolecules Through Molecular Dynamics Simulations. In 8TH INTERNATIONAL YOUNG SCIENTISTS CONFERENCE ON COMPUTATIONAL SCIENCE, YSC2019. ISSN 1877-0509, 2019, vol. 156, p. 69-78.
    JOSHI, R.R. - SONAVANE, U. - JANI, V. - SAXENA, A. - KOULGI, S. - UPPULADINNE, M. - SHARMA, N. - MALVIYA, S. - RAMAKRISHNAN, E.P. - GAVANE, V. - BAYASKAR, A. - MAHAJAN, R. - PANDEY, S. Turbo Analytics: Applications of Big Data and HPC in Drug Discovery. In STRUCTURAL BIOINFORMATICS: APPLICATIONS IN PRECLINICAL DRUG DISCOVERY PROCESS. ISSN 2542-4491, 2019, vol. 27, p. 347-374.
    Coimbra, J.T.S., Feghali, R., Ribeiro, R.P., Ramos, M.J., Fernandes, P.A. The importance of intramolecular hydrogen bonds on the translocation of the small drug piracetam through a lipid bilayer In RSC Advances 11(2020), pp. 899-908
    Peprah Addai F.,Wang T.,Kosiba A.A.,Lin F.,Zhen R.,Chen D.,Gu J.,Shi H.,Zhou Y. Integration of elastin-like polypeptide fusion system into the expression and purification of Lactobacillus sp. B164 ß-galactosidase for lactose hydrolysis In Bioresource TechnologyVolume 311 (2020) 123513
    Marjani, L.R., Imani, M., Jaliani, H.Z. Enhancement of pharmaceutical urate oxidase thermostability by rational design of de novo disulfide bridge In Iranian Journal of Biotechnology 18(2020),e2662, pp. 1-11
    Bakare, O.O., Fadaka, A.O., Keyster, M., Pretorius, A. Structural and molecular docking analytical studies of the predicted ligand binding sites of cadherin-1 in cancer prognostics In Advances and Applications in Bioinformatics and Chemistry (2020) 13, pp. 1-9
    DURELL, S.R. - BEN-NAIM, A. Temperature Dependence of Hydrophobic and Hydrophilic Forces and Interactions. In JOURNAL OF PHYSICAL CHEMISTRY B. ISSN 1520-6106, DEC 9 2021, vol. 125, no. 48, p. 13137-13146. Dostupné na: https://doi.org/10.1021/acs.jpcb.1c07802.
    KOLASA, M. - GALITA, G. - MAJSTEREK, I. - KUCHARSKA, E. - CZERCZAK, K. - WASKO, J. - BECHT, A. - FRACZYK, J. - GAJDA, A. - PIETRZAK, L. - SZYMANSKI, L. - KRAKOWIAK, A. - DRACZYNSKI, Z. - KOLESINSKA, B. Screening of Self-Assembling of Collagen IV Fragments into Stable Structures Potentially Useful in Regenerative Medicine. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. DEC 2021, vol. 22, no. 24. Dostupné na: https://doi.org/10.3390/ijms222413584.
    BARAKAT, A. - HAUKKA, M. - SOLIMAN, S.M. - ALI, M. - AL-MAJID, A.M. - EL-FAHAM, A. - DOMINGO, L.R. Straightforward Regio- and Diastereoselective Synthesis, Molecular Structure, Intermolecular Interactions and Mechanistic Study of Spirooxindole-Engrafted Rhodanine Analogs. In MOLECULES. DEC 2021, vol. 26, no. 23. Dostupné na: https://doi.org/10.3390/molecules26237276.
    ISLAM, R. - RAHAMAN, M. - HOQUE, H. - HASAN, N. - PRODHAN, S.H. - RUHAMA, A. - JEWEL, N.A. Computational and structural based approach to identify malignant nonsynonymous single nucleotide polymorphisms associated with CDK4 gene. In PLOS ONE. ISSN 1932-6203, NOV 4 2021, vol. 16, no. 11. Dostupné na: https://doi.org/10.1371/journal.pone.0259691.
    ITTISOPONPISAN, S. - JEERAPAN, I. In Silico Analysis of Glucose Oxidase from Aspergillus niger: Potential Cysteine Mutation Sites for Enhancing Protein Stability. In BIOENGINEERING-BASEL. NOV 2021, vol. 8, no. 11. Dostupné na: https://doi.org/10.3390/bioengineering8110188.
    KUMAR, S.U. - DOSS, C.G.P. Computational investigation to identify potent inhibitors of the GTPase-Kirsten RAt sarcoma virus (K-Ras) mutants G12C and G12D. In COMPUTERS IN BIOLOGY AND MEDICINE. ISSN 0010-4825, DEC 2021, vol. 139. Dostupné na: https://doi.org/10.1016/j.compbiomed.2021.104946.
    SINGH, O. - CHAKRABORTY, D. Preferential binding affinity of ions and their effect on structure and dynamics of water near antimicrobial peptide. In JOURNAL OF MOLECULAR LIQUIDS. ISSN 0167-7322, DEC 15 2021, vol. 344. Dostupné na: https://doi.org/10.1016/j.molliq.2021.117789.
    MUBARAK, A. - ABU ALI, H. - METANI, M. Two novel Cu (II) levofloxacin complexes with different bioactive nitrogen-based ligands; single-crystal X-ray and various biological activities determinations. In APPLIED ORGANOMETALLIC CHEMISTRY. ISSN 0268-2605, DEC 2021, vol. 35, no. 12. Dostupné na: https://doi.org/10.1002/aoc.6428.
    VAZQUEZ-VALADEZ, V.H. - HERNANDEZ-SERDA, A. - JIMENEZ-CABIEDES, M.F. - AGUIRRE-VIDAL, P. - GONZALEZ-TAPIA, I. - CARRENO-VARGAS, L. - ALARCON-LOPEZ, Y.A. - ESPEJEL-FUENTES, A. - MARTINEZ-SORIANO, P. - ALVAREZ, M.L. - VELAZQUEZ-SANCHEZ, A.M. - MARKARIAN, N.M. - ANGELES, E. - ABRAHAMYAN, L. Evaluation of Inhibitory Activity In Silico of In-House Thiomorpholine Compounds between the ACE2 Receptor and S1 Subunit of SARS-CoV-2 Spike. In PATHOGENS. SEP 2021, vol. 10, no. 9. Dostupné na: https://doi.org/10.3390/pathogens10091208.
    LI, J.C. - HOU, C.Y. - MA, X.L. - GUO, S. - ZHANG, H.C. - SHI, L.P. - LIAO, C.C. - ZHENG, B. - YE, L. - YANG, L. - HE, X.D. Entropy-Enthalpy Compensations Fold Proteins in Precise Ways. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. SEP 2021, vol. 22, no. 17. Dostupné na: https://doi.org/10.3390/ijms22179653.
    BAIGTS-ALLENDE, D. - DOOST, A.S. - RAMIREZ-RODRIGUES, M. - DEWETTINCK, K. - VAN DER MEEREN, P. - DE MEULENAER, B. - TZOMPA-SOSA, D. Insect protein concentrates from Mexican edible insects: Structural and functional characterization. In LWT-FOOD SCIENCE AND TECHNOLOGY. ISSN 0023-6438, DEC 2021, vol. 152. Dostupné na: https://doi.org/10.1016/j.lwt.2021.112267.
    GURUSINGHE, R.M. - FOX-LOE, A. - TUBERGEN, M.J. Structures of guaiacol and the guaiacol-argon van der waals complex from rotational spectroscopy of guaiacol isotopologues. In JOURNAL OF MOLECULAR STRUCTURE. ISSN 0022-2860, DEC 15 2021, vol. 1246. Dostupné na: https://doi.org/10.1016/j.molstruc.2021.131233.
    SAXENA, S. - ACHYUTH, B.S. - MURTHY, T.P.K. - CHANDRAMOHAN, V. - YADAV, A.K. - SINGH, T.R. Structural and functional analysis of disease-associated mutations in GOT1 gene: An in silico study. In COMPUTERS IN BIOLOGY AND MEDICINE. ISSN 0010-4825, SEP 2021, vol. 136. Dostupné na: https://doi.org/10.1016/j.compbiomed.2021.104695.
    HUNG, C.L. - KUO, Y.H. - LEE, S.W. - CHIANG, Y.W. Protein Stability Depends Critically on the Surface Hydrogen-Bonding Network: A Case Study of Bid Protein. In JOURNAL OF PHYSICAL CHEMISTRY B. ISSN 1520-6106, AUG 5 2021, vol. 125, no. 30, p. 8373-8382. Dostupné na: https://doi.org/10.1021/acs.jpcb.1c03245.
    PRABHAKARAN, E.N. - REDDY, D.N. - BANERJEE, S. A kinetic method for detecting intramolecular peptide H-bonds. In NEW JOURNAL OF CHEMISTRY. ISSN 1144-0546, SEP 21 2021, vol. 45, no. 35, p. 15887-15891. Dostupné na: https://doi.org/10.1039/d1nj03544d.
    ZHANG, W.Y. - KUANG, C.Y. - CHEN, X.Y. - YANG, X.L. - GUAN, H.M. Enhanced photoelectron transfer from light-harvesting antenna of phycocyanin to Fe3O4 hierarchical structure. In APPLIED SURFACE SCIENCE. ISSN 0169-4332, NOV 15 2021, vol. 566. Dostupné na: https://doi.org/10.1016/j.apsusc.2021.150652.
    PURSLOW, J.A. - THIMMESCH, J.N. - SIVO, V. - NGUYEN, T.T. - KHATIWADA, B. - DOTAS, R.R. - VENDITTI, V. A Single Point Mutation Controls the Rate of Interconversion Between the g ( + ) and g ( - ) Rotamers of the Histidine 189 chi 2 Angle That Activates Bacterial Enzyme I for Catalysis. In FRONTIERS IN MOLECULAR BIOSCIENCES. JUL 8 2021, vol. 8. Dostupné na: https://doi.org/10.3389/fmolb.2021.699203.
    WARGASETIA, T.L. - RATNAWATI, H. - WIDODO, N. - WIDYANANDA, M.H. Bioinformatics Study of Sea Cucumber Peptides as Antibreast Cancer Through Inhibiting the Activity of Overexpressed Protein (EGFR, PI3K, AKT1, and CDK4). In CANCER INFORMATICS. JUL 2021, vol. 20. Dostupné na: https://doi.org/10.1177/11769351211031864.
    AL-SUBAIE, A.M. - KAMARAJ, B. The Structural Effect of FLT3 Mutations at 835th Position and Their Interaction with Acute Myeloid Leukemia Inhibitors: In Silico Approach. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. JUL 2021, vol. 22, no. 14. Dostupné na: https://doi.org/10.3390/ijms22147602.
    CHO, M.K. - CHONG, S.H. - SHIN, S. - HAM, S. Site-Specific Backbone and Side-Chain Contributions to Thermodynamic Stabilizing Forces of the WW Domain. In JOURNAL OF PHYSICAL CHEMISTRY B. ISSN 1520-6106, JUL 8 2021, vol. 125, no. 26, p. 7108-7116. Dostupné na: https://doi.org/10.1021/acs.jpcb.1c01725.
    YU, L.L. - DENG, Z. - ZHANG, W.B. - LIU, S.L. - ZHANG, F.Y. - ZHOU, J.J. - MA, C.H. - WANG, C.X. Opposite Regulatory Effects of Immobilized Cations on the Folding Vs. Assembly of Melittin. In FRONTIERS IN CHEMISTRY. ISSN 2296-2646, JUN 11 2021, vol. 9. Dostupné na: https://doi.org/10.3389/fchem.2021.685947.
    HASSAN, M. - ZAHID, S. - ALASHWAL, H. - KLOCZKOWSKI, A. - MOUSTAFA, A.A. Mechanistic insights into TNFR1/MADD death domains in Alzheimer's disease through conformational molecular dynamic analysis. In SCIENTIFIC REPORTS. ISSN 2045-2322, JUN 10 2021, vol. 11, no. 1. Dostupné na: https://doi.org/10.1038/s41598-021-91606-4.
    GONZALEZ-FAUNE, P. - SANCHEZ-AREVALO, I. - SARKAR, S. - MAJHI, K. - BANDOPADHYAY, R. - CABRERA-BARJAS, G. - GOMEZ, A. - BANERJEE, A. Computational Study on Temperature Driven Structure-Function Relationship of Polysaccharide Producing Bacterial Glycosyl Transferase Enzyme. In POLYMERS. JUN 2021, vol. 13, no. 11. Dostupné na: https://doi.org/10.3390/polym13111771.
    ALZAHRANI, F.A. - HAWSAWI, Y.M. - ALTAYEB, H.N. - ALSIWIEHRI, N.O. - ALZAHRANI, O.R. - ALATWI, H.E. - AL-AMER, O.M. - ALOMAR, S. - MANSOUR, L. In silico modeling of the interaction between TEX19 and LIRE1, and analysis of TEX19 gene missense SNPs. In MOLECULAR GENETICS & GENOMIC MEDICINE. ISSN 2324-9269, JUL 2021, vol. 9, no. 7. Dostupné na: https://doi.org/10.1002/mgg3.1707.
    WATZIG, H. - HOFFSTEDT, M. - KREBS, F. - MINKNER, R. - SCHELLER, C. - ZAGST, H. Protein analysis and stability: Overcoming trial-and-error by grouping according to physicochemical properties. In JOURNAL OF CHROMATOGRAPHY A. ISSN 0021-9673, JUL 19 2021, vol. 1649. Dostupné na: https://doi.org/10.1016/j.chroma.2021.462234.
    TSOI, P.S. - QUAN, M.D. - CHOI, K.J. - DAO, K.M. - FERREON, J.C. - FERREON, A.C.M. Electrostatic modulation of hnRNPA1 low-complexity domain liquid-liquid phase separation and aggregation. In PROTEIN SCIENCE. ISSN 0961-8368, JUL 2021, vol. 30, no. 7, SI, p. 1408-1417. Dostupné na: https://doi.org/10.1002/pro.4108.
    AGGARWAL, N. - ELIAZ, D. - COHEN, H. - ROSENHEK-GOLDIAN, I. - COHEN, S.R. - KOZELL, A. - MASON, T.O. - SHIMANOVICH, U. Protein nanofibril design via manipulation of hydrogen bonds. In COMMUNICATIONS CHEMISTRY. ISSN 2399-3669, MAY 11 2021, vol. 4, no. 1. Dostupné na: https://doi.org/10.1038/s42004-021-00494-2.
    CHRISTOU, N.E. - GIANDOREGGIO-BARRANCO, K. - AYALA, I. - GLUSHONKOV, O. - ADAM, V. - BOURGEOIS, D. - BRUTSCHER, B. Disentangling Chromophore States in a Reversibly Switchable Green Fluorescent Protein: Mechanistic Insights from NMR Spectroscopy. In JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. ISSN 0002-7863, MAY 19 2021, vol. 143, no. 19, p. 7521-7530. Dostupné na: https://doi.org/10.1021/jacs.1c02442.
    ROSE, G.D. Protein folding - seeing is deceiving. In PROTEIN SCIENCE. ISSN 0961-8368, AUG 2021, vol. 30, no. 8, p. 1606-1616. Dostupné na: https://doi.org/10.1002/pro.4096.
    PORT, V.C. - ZEOLY, L.A. - COELHO, F. - CORMANICH, R.A. Through space J(FH) spin-spin coupling constant transmission pathways in 2-(trifluoromethyl)thiophenol: formation of unusual stabilizing bifurcated CF center dot center dot center dot HS and CF center dot center dot center dot SH interactions. In PHYSICAL CHEMISTRY CHEMICAL PHYSICS. ISSN 1463-9076, APR 21 2021, vol. 23, no. 15, p. 9080-9088. Dostupné na: https://doi.org/10.1039/d0cp05887d.
    VERMA, N. - TAO, Y.W. - KRAKA, E. Systematic Detection and Characterization of Hydrogen Bonding in Proteins via Local Vibrational Modes. In JOURNAL OF PHYSICAL CHEMISTRY B. ISSN 1520-6106, MAR 18 2021, vol. 125, no. 10, p. 2551-2565. Dostupné na: https://doi.org/10.1021/acs.jpcb.0c11392.
    AHMAD, S. - WAHEED, Y. - ISMAIL, S. - BHATTI, S. - ABBASI, S.W. - MUHAMMAD, K. Structure-Based Virtual Screening Identifies Multiple Stable Binding Sites at the RecA Domains of SARS-CoV-2 Helicase Enzyme. In MOLECULES. MAR 2021, vol. 26, no. 5. Dostupné na: https://doi.org/10.3390/molecules26051446.
    REINKNECHT, C. - RIGA, A. - RIVERA, J. - SNYDER, D.A. Patterns in Protein Flexibility: A Comparison of NMR "Ensembles", MD Trajectories, and Crystallographic B-Factors. In MOLECULES. MAR 2021, vol. 26, no. 5. Dostupné na: https://doi.org/10.3390/molecules26051484.
    SHARMA, L.G. - PANDEY, L.M. Thermomechanical process induces unfolding and fibrillation of bovine serum albumin. In FOOD HYDROCOLLOIDS. ISSN 0268-005X, MAR 2021, vol. 112. Dostupné na: https://doi.org/10.1016/j.foodhyd.2020.106294.
    STOGNIY, M.Y. - ANUFRIEV, S.A. - SHMAL'KO, A.V. - ANTROPOV, S.M. - ANISIMOV, A.A. - SUPONITSKY, K.Y. - FILIPPOV, O.A. - SIVAEV, I.B. The unexpected reactivity of 9-iodo-nido-carborane: from nucleophilic substitution reactions to the synthesis of tricobalt tris(dicarbollide) Na[4,4 ',4 ''-(MeOCH2CH2O)(3)-3,3 ',3 ''-Co-3(mu(3)-O)(mu(3)-S)(1,2-C2B9H10)(3)]. In DALTON TRANSACTIONS. ISSN 1477-9226, FEB 21 2021, vol. 50, no. 7, p. 2671-2688. Dostupné na: https://doi.org/10.1039/d0dt03857a.
    YADAV, A.K. - SINGH, T.R. Novel structural and functional impact of damaging single nucleotide polymorphisms (SNPs) on human SMYD2 protein using computational approaches. In META GENE. JUN 2021, vol. 28. Dostupné na: https://doi.org/10.1016/j.mgene.2021.100871.
    DODDA, S.R. - HOSSAIN, M. - KAPOOR, B.S. - DASGUPTA, S. - REDDY, B.V.P. - AIKAT, K. - MUKHOPADHYAY, S.S. Computational approach for identification, characterization, three-dimensional structure modelling and machine learning-based thermostability prediction of xylanases from the genome of Aspergillus fumigatus. In COMPUTATIONAL BIOLOGY AND CHEMISTRY. ISSN 1476-9271, APR 2021, vol. 91. Dostupné na: https://doi.org/10.1016/j.compbiolchem.2021.107451.
    SRIROOPREDDY, R. - RAGHURAMAN, P. - SREESHMA, J. - KAMALESH, D. - SUDANDIRADOSS, C. Exploring the structural significance of molecular switch mechanism alias motif phosphorylation in Wnt/beta-catenin and their crucial role in triple-negative breast cancer. In ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. ISSN 0003-9861, FEB 15 2021, vol. 698. Dostupné na: https://doi.org/10.1016/j.abb.2020.108722.
    ZHAO, Y. - LI, D.X. - BAI, X. - LUO, M.J. - FENG, Y. - ZHAO, Y.L. - MA, F.Q. - YANG, G.Y. Improved thermostability of proteinase K and recognizing the synergistic effect of Rosetta and FoldX approaches. In PROTEIN ENGINEERING DESIGN & SELECTION. ISSN 1741-0126, FEB 15 2021, vol. 34. Dostupné na: https://doi.org/10.1093/protein/gzab024.
    KUMAR, S.U. - SANKAR, S. - KUMAR, D.T. - YOUNES, S. - YOUNES, N. - SIVA, R. - DOSS, C.G.P. - ZAYED, H. Molecular dynamics, residue network analysis, and cross-correlation matrix to characterize the deleterious missense mutations in GALE causing galactosemia III. In CELL BIOCHEMISTRY AND BIOPHYSICS. ISSN 1085-9195, JUN 2021, vol. 79, no. 2, p. 201-219. Dostupné na: https://doi.org/10.1007/s12013-020-00960-z.
    MAHMOOD, M.S. - IRSHAD, S. - KALSOOM, U. - BATOOL, H. - BATOOL, S. - BUTT, T.A. In silico analysis of missense Single Nucleotide Variants (SNVs) in HBB gene associated with the beta-thalassemia. In GENE REPORTS. JUN 2021, vol. 23. Dostupné na: https://doi.org/10.1016/j.genrep.2021.101019.
    MOHAMMAD, A. - ALSHAWAF, E. - MARAFIE, S.K. - ABU-FARHA, M. - ABUBAKER, J. - AL-MULLA, F. Higher binding affinity of furin for SARS-CoV-2 spike (S) protein D614G mutant could be associated with higher SARS-CoV-2 infectivity. In INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES. ISSN 1201-9712, FEB 2021, vol. 103, p. 611-616. Dostupné na: https://doi.org/10.1016/j.ijid.2020.10.033.
    COIMBRA, J.T.S. - FEGHALI, R. - RIBEIRO, R.P. - RAMOS, M.J. - FERNANDES, P.A. The importance of intramolecular hydrogen bonds on the translocation of the small drug piracetam through a lipid bilayer. In RSC ADVANCES. JAN 12 2021, vol. 11, no. 2, p. 899-908. Dostupné na: https://doi.org/10.1039/d0ra09995c.
    ASANG, G.S. - ANUARSADAT, N.A.F. - ALIAS, N. - MOHAMED, N.A. Molecular construct of Mutant Carbohydrate-Binding Domain (CBM40) from Vibrio cholerae Non-O1 Sialidase. In BIOSCIENCE RESEARCH. ISSN 1811-9506, 2021, vol. 18, SI, p. 88-94.
    TAN, K.P. - SINGH, K. - HAZRA, A. - MADHUSUDHAN, M.S. Peptide bond planarity constrains hydrogen bond geometry and influences secondary structure conformations. In CURRENT RESEARCH IN STRUCTURAL BIOLOGY. 2021, vol. 3, p. 1-8. Dostupné na: https://doi.org/10.1016/j.crstbi.2020.11.002.
    LI, J. - CHU, Y.W. - YANG, R.L. - LIN, J.F. - SHAO, L. - WANG, L. An alkali-tolerant phospholipase D from Sphingobacterium thalpophilum 2015: Gene cloning, overproduction and characterization. In JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY. ISSN 0022-1260, 2021, vol. 67, no. 1, p. 1-8. Dostupné na: https://doi.org/10.2323/jgam.2020.01.012.
    KIM, H.H. - KIM, Y.C. - KIM, K. - KIM, A.D. - JEONG, B.H. Novel Polymorphisms and Genetic Features of the Prion Protein Gene (PRNP) in Cats, Hosts of Feline Spongiform Encephalopathy. In GENES. JAN 2021, vol. 12, no. 1. Dostupné na: https://doi.org/10.3390/genes12010013.
    KategóriaADCA - Vedecké práce v zahraničných karentovaných časopisoch impaktovaných
    Kategória (od 2022)V3 - Vedecký výstup publikačnej činnosti z časopisu
    Typ výstupučlánok
    Rok vykazovania2014
    Registrované vWOS
    Registrované vSCOPUS
    Registrované vCCC
    DOI 10.1002/pro.2449
    článok

    článok

    rokCCIFIF Q (best)JCR Av Jour IF PercSJRSJR Q (best)CiteScore
    A
    rok vydaniarok metrikyIFIF Q (best)SJRSJR Q (best)
    201420132.861Q31.982Q1
Počet záznamov: 1  

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