Počet záznamov: 1  

OXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB

  1. NázovOXSA: An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB
    Autor Purvis L.A.B.
    Spoluautori Clarke W.T.

    Biasiolli L.

    Valkovič Ladislav 1986 SAVMER - Ústav merania SAV    SCOPUS    RID    ORCID

    Robson M.D.

    Rodgers C.T.

    Zdroj.dok. PLoS ONE. Vol. 12, no. 9 (2017), art. no. e0185356
    Jazyk dok.eng - angličtina
    Druh dok.rozpis článkov z periodík (rbx)
    OhlasySANTOS-DIAZ, Alejandro - OBRUCHKOV, Sergei I. - SCHULTE, Rolf F. - NOSEWORTHY, Michael D. Phosphorus magnetic resonance spectroscopic imaging using flyback echo planar readout trajectories. In MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE. ISSN 0968-5243, 2018, vol. 31, no. 4, pp. 553-564.
    SANTOS-DIAZ, Alejandro - NOSEWORTHY, Michael D. Comparison of compressed sensing reconstruction algorithms for P-31 magnetic resonance spectroscopic imaging. In MAGNETIC RESONANCE IMAGING. ISSN 0730-725X, 2019, vol. 59, pp. 88-96.
    SANTOS-DIAZ, Alejandro - HARASYM, Diana - NOSEWORTHY, Michael D. Dynamic P-31 spectroscopic imaging of skeletal muscles combining flyback echo-planar spectroscopic imaging and compressed sensing. In MAGNETIC RESONANCE IN MEDICINE. ISSN 0740-3194, 2019, vol. 81, no. 6, pp. 3453-3461.
    GARRISON, L. - VAŠÍČEK, J. - GRÜNER, R. - SMIT, N.N. - BRUCKNER, S. SpectraMosaic: An exploratory tool for the interactive visual analysis of magnetic resonance spectroscopy data. In EUROGRAPHICS WORKSHOP ON VISUAL COMPUTING FOR BIOLOGY AND MEDICINE, VCBM 2019, 2019.
    RIDER, O.J. - APPS, A. - MILLER, J.J.J.J. - LAU, J.Y.C. - LEWIS, A.J.M. - PETERZAN, M.A. - DODD, M.S. - LAU, A.Z. - TRUMPER, C. - GALLAGHER, F.A. - GRIST, J.T. - BRINDLE, K.M. - NEUBAUER, S. - TYLER, D.J. Noninvasive In Vivo Assessment of Cardiac Metabolism in the Healthy and Diabetic Human Heart Using Hyperpolarized C-13 MRI. In CIRCULATION RESEARCH. ISSN 0009-7330, MAR 13 2020, vol. 126, no. 6, p. 725-736.
    KREIS, F. - WRIGHT, A.J. - HESSE, F. - FALA, M. - HU, D.E. - BRINDLE, K.M. Measuring Tumor Glycolytic Flux in Vivo by Using Fast Deuterium MRI. In RADIOLOGY. ISSN 0033-8419, FEB 2020, vol. 294, no. 2, p. 289-296.
    PARRY, S.N.A. - ROSQVIST, F. - MOZES, F.E. - CORNFIELD, T. - HUTCHINSON, M. - PICHE, M.E. - HULSMEIER, A.J. - HORNEMANN, T. - DYSON, P. - HODSON, L. Intrahepatic Fat and Postprandial Glycemia Increase After Consumption of a Diet Enriched in Saturated Fat Compared With Free Sugars. In DIABETES CARE. ISSN 0149-5992, MAY 2020, vol. 43, no. 5, p. 1134-1141.
    OELTZSCHNER, G. - ZOLLNER, H.J. - HUI, S.C.N. - MIKKELSEN, M. - SALEH, M.G. - TAPPER, S. - EDDEN, R.A.E. Osprey: Open-source processing, reconstruction & estimation of magnetic resonance spectroscopy data. In JOURNAL OF NEUROSCIENCE METHODS. ISSN 0165-0270, SEP 1 2020, vol. 343.
    GARRISON, L. - VASICEK, J. - CRAVEN, A.R. - GRUNER, R. - SMIT, N.N. - BRUCKNER, S. Interactive visual exploration of metabolite ratios in MR spectroscopy studies. In COMPUTERS & GRAPHICS-UK. ISSN 0097-8493, NOV 2020, vol. 92, p. 1-12.
    SANTOS-DIAZ, A. - NOSEWORTHY, M.D. Phosphorus magnetic resonance spectroscopy and imaging (P-31-MRS/MRSI) as a window to brain and muscle metabolism: A review of the methods. In BIOMEDICAL SIGNAL PROCESSING AND CONTROL. ISSN 1746-8094, JUL 2020, vol. 60.
    JAYASWAL, A.N.A. - LEVICK, C. - SELVARAJ, E.A. - DENNIS, A. - BOOTH, J.C. - COLLIER, J. - COBBOLD, J. - TUNNICLIFFE, E.M. - KELLY, M. - BARNES, E. - NEUBAUER, S. - BANERJEE, R. - PAVLIDES, M. Prognostic value of multiparametric magnetic resonance imaging, transient elastography and blood-based fibrosis markers in patients with chronic liver disease. In LIVER INTERNATIONAL. ISSN 1478-3223, DEC 2020, vol. 40, no. 12, p. 3071-3082.
    KERR, M. - MILLER, J.J. - THAPA, D. - STIEWE, S. - TIMM, K.N. - APARICIO, C.N.M. - SCOTT, I. - TYLER, D.J. - HEATHER, L.C. Rescue of myocardial energetic dysfunction in diabetes through the correction of mitochondrial hyperacetylation by honokiol. In JCI INSIGHT. SEP 3 2020, vol. 5, no. 17.
    WATSON, W.D. - TIMM, K.N. - LEWIS, A.J. - MILLER, J.J.J. - EMMANUEL, Y. - CLARKE, K. - NEUBAUER, S. - TYLER, D.J. - RIDER, O.J. Nicotinic acid receptor agonists impair myocardial contractility by energy starvation. In FASEB JOURNAL. ISSN 0892-6638, NOV 2020, vol. 34, no. 11, p. 14878-14891.
    ROAT, S. - VIT, M. - WAMPL, S. - SCHMID, A.I. - LAISTLER, E. A Flexible Array for Cardiac P-31 MR Spectroscopy at 7 T. In FRONTIERS IN PHYSICS. ISSN 2296-424X, APR 15 2020, vol. 8.
    JAYASWAL, A.N.A. - LEVICK, C. - COLLIER, J. - TUNNICLIFFE, E.M. - KELLY, M.D. - NEUBAUER, S. - BARNES, E. - PAVLIDES, M. Liver cT(1) decreases following direct-acting antiviral therapy in patients with chronic hepatitis C virus. In ABDOMINAL RADIOLOGY. ISSN 2366-004X, 2020.
    BHADURI, S. - CHAHID, A. - ACHTEN, E. - LALEG-KIRATI, T.M. - SERRAI, H. SCSA based MATLAB pre-processing toolbox for 1H MR spectroscopic water suppression and denoising. In INFORMATICS IN MEDICINE UNLOCKED. ISSN 2352-9148, 2020, vol. 18.
    VAEGGEMOSE, M. - SCHULTE, R.F. - LAUSTSEN, C. Comprehensive Literature Review of Hyperpolarized Carbon-13 MRI: The Road to Clinical Application. In METABOLITES, 2021, vol. 11, no. 4. Dostupné na: https://doi.org/10.3390/metabo11040219.
    LISERRE, R. - PINELLI, L. - GASPAROTTI, R. MR spectroscopy in pediatric neuroradiology. In TRANSLATIONAL PEDIATRICS. ISSN 2224-4344, 2021, vol. 10, no. 4, p. 1169-+. Dostupné na: https://doi.org/10.21037/tp-20-445.
    JAYASWAL, A.N.A. - LEVICK, C. - COLLIER, J. - TUNNICLIFFE, E.M. - KELLY, M.D. - NEUBAUER, S. - BARNES, E. - PAVLIDES, M. Liver cT(1) decreases following direct-acting antiviral therapy in patients with chronic hepatitis C virus. In ABDOMINAL RADIOLOGY. ISSN 2366-004X, 2021, vol. 46, no. 5, p. 1947-1957. Dostupné na: https://doi.org/10.1007/s00261-020-02860-5.
    KERR, M. - DENNIS, K. - CARR, C. - FULLER, W. - BERRIDGE, G. - ROHLING, S. - AITKEN, C. - LOPEZ, C. - FISCHER, R. - MILLER, J. - CLARKE, K. - TYLER, D. - HEATHER, L. Diabetic mitochondria are resistant to palmitoyl CoA inhibition of respiration, which is detrimental during ischemia. In FASEB JOURNAL. ISSN 0892-6638, 2021, vol. 35, no. 8. Dostupné na: https://doi.org/10.1096/fj.202100394R.
    SPARTERA, M. - PESSOA-AMORIM, G. - STRACQUADANIO, A. - VON ENDE, A. - FLETCHER, A. - MANLEY, P. - NEUBAUER, S. - FERREIRA, V.M. - CASADEI, B. - HESS, A.T. - WIJESURENDRA, R.S. Left atrial 4D flow cardiovascular magnetic resonance: a reproducibility study in sinus rhythm and atrial fibrillation. In JOURNAL OF CARDIOVASCULAR MAGNETIC RESONANCE. ISSN 1097-6647, 2021, vol. 23, no. 1. Dostupné na: https://doi.org/10.1186/s12968-021-00729-0.
    TAN, J.L. - DJAYAKARSANA, D. - WANG, H. - CHAN, R.W. - BAILEY, C. - LAU, A.Z. Deuterium MRS of early treatment-induced changes in tumour lactate in vitro. In NMR IN BIOMEDICINE. ISSN 0952-3480, 2021, vol. 34, no. 12. Dostupné na: https://doi.org/10.1002/nbm.4599.
    VAN DEN WILDENBERG, L. - GURSAN, A. - SEELEN, L.W.F. - VAN DER VELDEN, T.A. - GOSSELINK, M.W.J.M. - FROELING, M. - VAN DER KEMP, W.J.M. - KLOMP, D.W.J. - PROMPERS, J.J. In vivo phosphorus magnetic resonance spectroscopic imaging of the whole human liver at 7 T using a phosphorus whole-body transmit coil and 16-channel receive array: Repeatability and effects of principal component analysis-based denoising. In NMR IN BIOMEDICINE, 2022. ISSN 0952-3480. Dostupné na: https://doi.org/10.1002/nbm.4877.
    PRASUHN, J. - GOTTLICH, M. - GERKAN, F. - KOUROU, S. - EBELING, B. - KASTEN, M. - HANSSEN, H. - KLEIN, C. - BRUGGEMANN, N. Relationship between brain iron deposition and mitochondrial dysfunction in idiopathic Parkinson's disease. In MOLECULAR MEDICINE. ISSN 1076-1551, DEC 2022, vol. 28, no. 1. Dostupné na: https://doi.org/10.1186/s10020-021-00426-9.
    HESSE, F. - WRIGHT, A.J. - SOMAI, V. - BULAT, F. - KREIS, F. - BRINDLE, K.M. Imaging Glioblastoma Response to Radiotherapy Using H-2 Magnetic Resonance Spectroscopy Measurements of Fumarate Metabolism. In CANCER RESEARCH. ISSN 0008-5472, OCT 1 2022, vol. 82, no. 19, p. 3622-3633. Dostupné na: https://doi.org/10.1158/0008-5472.CAN-22-0101.
    JEX, N. - CHOWDHARY, A. - THIRUNAVUKARASU, S. - PROCTER, H. - SENGUPTA, A. - NATARAJAN, P. - KOTHA, S. - POENAR, A.M. - SWOBODA, P. - XUE, H. - CUBBON, R.M. - KELLMAN, P. - GREENWOOD, J.P. - PLEIN, S. - PAGE, S. - LEVELT, E. Coexistent Diabetes Is Associated With the Presence of Adverse Phenotypic Features in Patients With Hypertrophic Cardiomyopathy. In DIABETES CARE. ISSN 0149-5992, AUG 2022, vol. 45, no. 8, p. 1852-1862. Dostupné na: https://doi.org/10.2337/dc22-0083.
    HESSE, F. - WRIGHT, A.J. - BULAT, F. - SOMAI, V. - KREIS, F. - BRINDLE, K.M. Deuterium MRSI of tumor cell death in vivo following oral delivery of H-2-labeled fumarate. In MAGNETIC RESONANCE IN MEDICINE. ISSN 0740-3194, NOV 2022, vol. 88, no. 5, p. 2014-2020. Dostupné na: https://doi.org/10.1002/mrm.29379.
    CENGIZ, S. - YILDIRIM, M. - BAS, A. - OZTURK-ISIK, E. ORYX-MRSI: A fully-automated open-source software for proton magnetic resonance spectroscopic imaging data analysis. In INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY. ISSN 0899-9457, JUL 2022, vol. 32, no. 4, p. 1068-1083. Dostupné na: https://doi.org/10.1002/ima.22748.
    KAGGIE, J. - KHAN, A.S. - MATYS, T. - SCHULTE, R.F. - LOCKE, M.J. - GRIMMER, A. - FRARY, A. - MENIH, I.H. - LATIMER, E. - GRAVES, M.J. - MCLEAN, M.A. - GALLAGHER, F.A. Deuterium metabolic imaging and hyperpolarized C-13-MRI of the normal human brain at clinical field strength reveals differential cerebral metabolism. In NEUROIMAGE. ISSN 1053-8119, AUG 15 2022, vol. 257. Dostupné na: https://doi.org/10.1016/j.neuroimage.2022.119284.
    HANSEN, K. - HANSEN, E.S.S. - JESPERSEN, N.R.V. - BOTKER, H.E. - PEDERSEN, M. - WANG, T.B. - LAUSTSEN, C. Hyperpolarized C-13 MRI Reveals Large Changes in Pyruvate Metabolism During Digestion in Snakes. In MAGNETIC RESONANCE IN MEDICINE. ISSN 0740-3194, AUG 2022, vol. 88, no. 2, p. 890-900. Dostupné na: https://doi.org/10.1002/mrm.29239.
    BRAKEDAL, B. - DOLLE, C. - RIEMER, F. - MA, Y.L. - NIDO, G.S. - SKEIE, G.O. - CRAVEN, A.R. - SCHWARZLMULLER, T. - BREKKE, N. - DIAB, J. - SVERKELI, L. - SKJEIE, V. - VARHAUG, K. - TYSNES, O.B. - PENG, S.C. - HAUGARVOLL, K. - ZIEGLER, M. - GRUNER, R. - EIDELBERG, D. - TZOULIS, C. The NADPARK study: A randomized phase I trial of nicotinamide riboside supplementation in Parkinson's disease. In CELL METABOLISM. ISSN 1550-4131, MAR 1 2022, vol. 34, no. 3, p. 396-+. Dostupné na: https://doi.org/10.1016/j.cmet.2022.02.001.
    CRAVEN, A.R. - BHATTACHARYYA, P.K. - CLARKE, W.T. - DYDAK, U. - EDDEN, R.A.E. - ERSLAND, L. - MANDAL, P.K. - MIKKELSEN, M. - MURDOCH, J.B. - NEAR, J. - RIDEAUX, R. - SHUKLA, D. - WANG, M. - WILSON, M. - ZOLLNER, H.J. - HUGDAHL, K. - OELTZSCHNER, G. Comparison of seven modelling algorithms for gamma-aminobutyric acid-edited proton magnetic resonance spectroscopy. In NMR IN BIOMEDICINE. ISSN 0952-3480, JUL 2022, vol. 35, no. 7. Dostupné na: https://doi.org/10.1002/nbm.4702.
    PRASUHN, J. - GOTTLICH, M. - EBELING, B. - KOUROU, S. - GERKAN, F. - BODEMANN, C. - GROSSER, S.S. - REUTHER, K. - HANSSEN, H. - BRUGGEMANN, N. Assessment of Bioenergetic Deficits in Patients With Parkinson Disease and Progressive Supranuclear Palsy Using P-31-MRSI. In NEUROLOGY. ISSN 0028-3878, DEC 13 2022, vol. 99, no. 24, p. E2683-E2692. Dostupné na: https://doi.org/10.1212/WNL.0000000000201288.
    HESSE, F. - WRIGHT, A. - BULAT, F. - KREIS, F. - BRINDLE, K.M. Assessment of the sensitivity of SUP2/SUPH MR spectroscopy measurements of [2,3-SUP2/SUPHsub2/sub]fumarate metabolism for detecting tumor cell death. In NMR IN BIOMEDICINE. ISSN 0952-3480, 2023 OCT 2023, vol. 36, no. 10. Dostupné na: https://doi.org/10.1002/nbm.4965.
    NAM, K.M. - GURSAN, A. - BHOGAL, A.A. - WIJNEN, J.P. - KLOMP, D.W.J. - PROMPERS, J.J. - HENDRIKS, A.D. Deuterium echo-planar spectroscopic imaging (EPSI) in the human liver in vivo at 7 T. In MAGNETIC RESONANCE IN MEDICINE. ISSN 0740-3194, 2023 SEP 2023, vol. 90, no. 3, p. 863-874. Dostupné na: https://doi.org/10.1002/mrm.29696.
    GURSAN, A. - HENDRIKS, A.D. - WELTING, D. - DE JONG, P.A. - KLOMP, D.W.J. - PROMPERS, J.J. Deuterium body array for the simultaneous measurement of hepatic and renal glucose metabolism and gastric emptying with dynamic 3D deuterium metabolic imaging at 7 T. In NMR IN BIOMEDICINE. ISSN 0952-3480, 2023 AUG 2023, vol. 36, no. 8. Dostupné na: https://doi.org/10.1002/nbm.4926.
    KHAN, A.S. - MCLEAN, M.A. - KAGGIE, J.D. - HORVAT-MENIH, I. - MATYS, T. - SCHULTE, R.F. - LOCKE, M.J. - GRIMMER, A. - WODTKE, P. - LATIMER, E. - FRARY, A. - GRAVES, M.J. – GALLAGHER, F.A. Measuring extracellular human brain pH and amino acid metabolism with hyperpolarized [1-13C] pyruvate. In medRxiv, 2023, dostupné na: https://doi.org/10.1101/2023.03.23.23287579.
    WODTKE, P. - GRASHEI, M. - SCHILLING, F. Quo Vadis Hyperpolarized sup13/supC MRI? In ZEITSCHRIFT FUR MEDIZINISCHE PHYSIK, 2024. ISSN 0939-3889. Dostupné na: https://doi.org/10.1016/j.zemedi.2023.10.004.
    ALCICEK, S. - CRAIG-CRAVEN, A.R. - SHEN, X. - CHIEW, M. - OZEN, A. - SAWIAK, S. - PILATUS, U. – EMIR, U.E. Multi-site Ultrashort Echo Time 3D Phosphorous MRSI repeatability using novel Rosette Trajectory (PETALUTE). In bioRxiv, 2024, dostupné na: https://doi.org/10.1101/2024.02.07.579294.
    KategóriaADMA - Vedecké práce v zahraničných impaktovaných časopisoch registrovaných vo WOS Core Collection alebo SCOPUS
    Kategória (od 2022)V3 - Vedecký výstup publikačnej činnosti z časopisu
    Typ výstupučlánok
    Rok vykazovania2017
    Registrované vWOS
    Registrované vSCOPUS
    DOI 10.1371/journal.pone.0185356
    článok

    článok

    Názov súboruPrístupVeľkosťStiahnutéTypLicence
    OXSA An open-source magnetic resonance spectroscopy analysis toolbox in MATLAB.pdfPrístupný4.1 MB1Vydavateľská verzia
    rokCCIFIF Q (best)JCR Av Jour IF PercSJRSJR Q (best)CiteScore
    N
    rok vydaniarok metrikyIFIF Q (best)SJRSJR Q (best)
    201720162.806Q11.236Q1
Počet záznamov: 1  

  Tieto stránky využívajú súbory cookies, ktoré uľahčujú ich prezeranie. Ďalšie informácie o tom ako používame cookies.