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Are TADs supercoiled?
Názov Are TADs supercoiled? Autor Račko Dušan 1977- SAVPOLYM - Ústav polymérov SAV Spoluautori Benedetti Fabrizio Dorier Julian Stasiak Andrzej Zdroj.dok. Nucleic acids research. Vol. 47, no. 2 (2019), p. 521-532 Jazyk dok. eng - angličtina Druh dok. rozpis článkov z periodík (rbx) Ohlasy CAMPBELL, M.J. Tales from topographic oceans: topologically associated domains and cancer. In ENDOCRINE-RELATED CANCER. ISSN 1351-0088, NOV 2019, vol. 26, no. 11, p. R611-R626. JABBARI, K. - CHAKRABORTY, M. - WIEHE, T. DNA sequence-dependent chromatin architecture and nuclear hubs formation. In SCIENTIFIC REPORTS. ISSN 2045-2322, OCT 10 2019, vol. 9. BARANOV, V.S. - KOGAN, I.Y. - KUZNETZOVA, T.V. Advances in Developmental Genetics and Achievements in Assisted Reproductive Technology. In RUSSIAN JOURNAL OF GENETICS. ISSN 1022-7954, OCT 2019, vol. 55, no. 10, p. 1171-1182. MATTHEWS, N.E. - WHITE, R. Chromatin Architecture in the Fly: Living without CTCF/Cohesin Loop Extrusion? Alternating Chromatin States Provide a Basis for Domain Architecture in Drosophila. In BIOESSAYS. ISSN 0265-9247, SEP 2019, vol. 41, no. 9. BRACKEY, C.A. - MARENDUZZO, D. - GILBERT, N. Mechanistic modeling of chromatin folding to understand function. In NATURE METHODS. ISSN 1548-7091, AUG 2020, vol. 17, no. 8, p. 767-775. SEVIER, S.A. Mechanical properties of DNA replication. In PHYSICAL REVIEW RESEARCH. JUN 3 2020, vol. 2, no. 2. KANTIDZE, O.L. - RAZIN, S.V. Weak interactions in higher-order chromatin organization. In NUCLEIC ACIDS RESEARCH. ISSN 0305-1048, MAY 21 2020, vol. 48, no. 9, p. 4614-4626. CHEDIN, F. - BENHAM, C.J. Emerging roles for R-loop structures in the management of topological stress. In JOURNAL OF BIOLOGICAL CHEMISTRY. ISSN 0021-9258, APR 3 2020, vol. 295, no. 14, p. 4684-4695. GHOSH, S.K. - JOST, D. Genome organization via loop extrusion, insights from polymer physics models. In BRIEFINGS IN FUNCTIONAL GENOMICS. ISSN 2041-2649, MAR 2020, vol. 19, no. 2, SI, p. 119-127. PORTILLO-LEDESMA, S. - SCHLICK, T. Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling. In WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE. ISSN 1759-0876, MAR 2020, vol. 10, no. 2. HANSEN, A.S. CTCF as a boundary factor for cohesin-mediated loop extrusion: evidence for a multi-step mechanism. In NUCLEUS. ISSN 1949-1034, JAN 1 2020, vol. 11, no. 1, p. 132-148. SMREK, J. - CHUBAK, I. - LIKOS, C.N. - KREMER, K. Active topological glass. In NATURE COMMUNICATIONS. ISSN 2041-1723, JAN 7 2020, vol. 11, no. 1. AUSTIN, C.A. - COWELL, I.G. - KHAZEEM, M.M. - LOK, D. - NG, H.T. TOP2B's contributions to transcription. In BIOCHEMICAL SOCIETY TRANSACTIONS. ISSN 0300-5127, DEC 2021, vol. 49, no. 6, p. 2483-2493. NEGUEMBOR, M.V. - MARTIN, L. - CASTELLS-GARCIA, A. - GOMEZ-GARCIA, P.A. - VICARIO, C. - CARNEVALI, D. - ABED, J.A. - GRANADOS, A. - SEBASTIAN-PEREZ, R. - SOTTILE, F. - SOLON, J. - WU, C.T. - LAKADAMYALI, M. - COSMA, M.P. Transcription-mediated supercoiling regulates genome folding and loop formation. In MOLECULAR CELL. ISSN 1097-2765, AUG 5 2021, vol. 81, no. 15, p. 3065-+. KRASSOVSKY, K. - GHOSH, R.P. - MEYER, B.J. Genome-wide profiling reveals functional interplay of DNA sequence composition, transcriptional activity, and nucleosome positioning in driving DNA supercoiling and helix destabilization in C. elegans. In GENOME RESEARCH. ISSN 1088-9051, JUL 2021, vol. 31, no. 7, p. 1187-+. STEPNIAK, K. - MACHNICKA, M.A. - MIECZKOWSKI, J. - MACIOSZEK, A. - WOJTAS, B. - GIELNIEWSKI, B. - POLESZAK, K. - PERYCZ, M. - KROL, S.K. - GUZIK, R. - DABROWSKI, M.J. - DRAMINSKI, M. - JARDANOWSKA, M. - GRABOWICZ, I. - DZIEDZIC, A. - KRANAS, H. - SIENKIEWICZ, K. - DIAMANTI, K. - KOTULSKA, K. - GRAJKOWSKA, W. - ROSZKOWSKI, M. - CZERNICKI, T. - MARCHEL, A. - KOMOROWSKI, J. - KAMINSKA, B. - WILCZYNSKI, B. Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas. In NATURE COMMUNICATIONS. JUN 15 2021, vol. 12, no. 1. HANKE, A. - ZIRALDO, R. - LEVENE, S.D. DNA-Topology Simplification by Topoisomerases. In MOLECULES. JUN 2021, vol. 26, no. 11. HERRERO-RUIZ, A. - MARTINEZ-GARCIA, P.M. - TERRON-BAUTISTA, J. - MILLAN-ZAMBRANO, G. - LIEBERMAN, J.A. - JIMENO-GONZALEZ, S. - CORTES-LEDESMA, F. Topoisomerase II alpha represses transcription by enforcing promoter-proximal pausing. In CELL REPORTS. ISSN 2211-1247, APR 13 2021, vol. 35, no. 2. WINOGRADOFF, D. - LI, P.Y. - JOSHI, H. - QUEDNAU, L. - MAFFEO, C. - AKSIMENTIEV, A. Chiral Systems Made from DNA. In ADVANCED SCIENCE. MAR 2021, vol. 8, no. 5. BARANOV, Vladislav S. - KUZNETZOVA, Tatiana V. Nuclear stability in early embryo. Chromosomal aberrations. In Cytogenomics, 2021-01-01, pp. 307-325. Dostupné na: https://doi.org/10.1016/B978-0-12-823579-9.00012-6. JHA, R.K. - LEVENS, D. - KOUZINE, F. Mechanical determinants of chromatin topology and gene expression. In NUCLEUS. ISSN 1949-1034, DEC 31 2022, vol. 13, no. 1, p. 94-115. Dostupné na: https://doi.org/10.1080/19491034.2022.2038868. MEYER, B.J. The X chromosome ini C./ii elegans/i sex determination and dosage compensation. In CURRENT OPINION IN GENETICS & DEVELOPMENT. ISSN 0959-437X, JUN 2022, vol. 74. Dostupné na: https://doi.org/10.1016/j.gde.2022.101912. VISSER, B.J. - SHARMA, S. - CHEN, P.J. - MCMULLIN, A.B. - BATES, M.L. - BATES, D. Psoralen mapping reveals a bacterial genome supercoiling landscape dominated by transcription. In NUCLEIC ACIDS RESEARCH. ISSN 0305-1048, MAY 6 2022, vol. 50, no. 8, p. 4436-4449. Dostupné na: https://doi.org/10.1093/nar/gkac244. KACZMARCZYK, L.S. - LEVI, N. - SEGAL, T. - SALMON-DIVON, M. - GERLITZ, G. CTCF supports preferentially short lamina-associated domains. In CHROMOSOME RESEARCH. ISSN 0967-3849, MAR 2022, vol. 30, no. 1, p. 123-136. Dostupné na: https://doi.org/10.1007/s10577-022-09686-5. MEYER, B.J. Mechanisms of sex determination and X-chromosome dosage compensation. In GENETICS. ISSN 0016-6731, FEB 4 2022, vol. 220, no. 2. Dostupné na: https://doi.org/10.1093/genetics/iyab197. TRIPATHI, S. - BRAHMACHARI, S. - ONUCHIC, J.N. - LEVINE, H. DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases. In NUCLEIC ACIDS RESEARCH. ISSN 0305-1048, FEB 22 2022, vol. 50, no. 3, p. 1269-1279. Dostupné na: https://doi.org/10.1093/nar/gkab1252. Kategória ADCA - Vedecké práce v zahraničných karentovaných časopisoch impaktovaných Kategória (od 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Typ výstupu článok Rok vykazovania 2019 Registrované v WOS Registrované v SCOPUS Registrované v CCC DOI 10.1093/nar/gky1091 
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Názov súboru Prístup Veľkosť Stiahnuté Typ Licence Are TADs supercoiled.pdf Prístupný 2.1 MB 0 Vydavateľská verzia rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore A rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2019 2018 11.147 Q1 8.636 Q1
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