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viruSITE-integrated database for viral genomics
Názov viruSITE-integrated database for viral genomics Autor Stano Matej SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Spoluautori Beke Gábor SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Kľučár Ľuboš SAVMOBIO - Ústav molekulárnej biológie SAV ORCID Zdroj.dok. Database. (2016), art. no. baw162 Jazyk dok. eng - angličtina URL URL link Druh dok. rozpis článkov z periodík (rbx) Ohlasy ZHANG, H.H. - ZHOU, Q.Z. - WANG, P.L. - XIONG, X.M. - LUCHETTI, A. - RAOULT, D. - LEVASSEUR, A. - SANTINI, S. - ABERGEL, C. - LEGENDRE, M. - DREZEN, J.M. - BELIYEAU, C. - CUSSON, M. - JIANG, S.H. - BAO, H.O. - SUN, C. - BUREAU, T.E. - CHENG, P.F. - HAN, M.J. - ZHANG, Z. - ZHANG, X.G. - DAI, F.Y. Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes. In MOBILE DNA. JUN 18 2018, vol. 9. JAMES, B.T. - LUCZAK, B.B. - GIRGIS, H.Z. MeShClust: an intelligent tool for clustering DNA sequences. In NUCLEIC ACIDS RESEARCH. AUG 21 2018, vol. 46, no. 14. MASUTANI, Bansho - MORISHITA, Shinichi. A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. In BIOINFORMATICS. ISSN 1367-4803, 2019, vol. 35, no. 4, pp. 584-592. WAINAINA, James M. - ATEKA, Elijah - MAKORI, Timothy - KEHOE, Monica A. - BOYKIN, Laura M. A metagenomic study of DNA viruses from samples of local varieties of common bean in Kenya. In PEERJ. ISSN 2167-8359, 2019, vol. 7, no., pp.e6465 BRANDES, Nadav - LINIAL, Michal. Giant VirusesBig Surprises. In VIRUSES-BASEL. ISSN 1999-4915, 2019, vol. 11, no. 5, pp.404 LOMBARDI, Emilia Puig - LONDONO-VALLEJO, Arturo - NICOLAS, Alain. Relationship Between G-Quadruplex Sequence Composition in Viruses and Their Hosts. In MOLECULES, 2019, vol. 24, no. 10, pp.1942 KARTALI, Tunde - NYILASI, Ildiko - SZABO, Boglarka - KOCSUBE, Sandor - PATAI, Roland - POLGAR, Tamas F. - NAGY, Gabor - VAGVOLGYI, Csaba - PAPP, Tamas. Detection and Molecular Characterization of Novel dsRNA Viruses Related to the Totiviridae Family in Umbelopsis ramanniana. In FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. ISSN 2235-2988, 2019, vol. 9, no., pp.249 CRISPIM, Josicelli Souza - DIAS, Roberto Sousa - LAGUARDIA, Clara Nogueira - ARAUJO, Larissa Cristina - DA SILVA, Jessica Duarte - PEREIRA VIDIGAL, Pedro Marcus - DE SOUSA, Maira Paula - DA SILVA, Cynthia Canedo - SANTANA, Mateus Ferreira - DE PAULA, Sergio Oliveira. Desulfovibrio alaskensis prophages and their possible involvement in the horizontal transfer of genes by outer membrane vesicles. In GENE. ISSN 0378-1119, 2019, vol. 703, no., pp. 50-57. ARIS-BROSOU, Stephane - PARENT, Louis - IBEH, Neke. Viral Long-Term Evolutionary Strategies Favor Stability over Proliferation. In VIRUSES-BASEL, 2019, vol. 11, no. 8, pp.677 JOHANA MADRONERO, Leidy - CORREDOR-ROZO, Zayda-Lorena - ESCOBAR-PEREZ, Javier - VELANDIA-ROMERO, Myriam-Lucia. NEXT GENERATION SEQUENCING AND PROTEOMICS IN PLANT VIROLOGY: HOW IS COLOMBIA DOING? In ACTA BIOLOGICA COLOMBIANA. ISSN 1900-1649, 2019, vol. 24, no. 3, pp. 423-438. GLEIZES, A. - LAUBSCHER, F. - GUEX, N. - ISELI, C. - JUNIER, T. - CORDEY, S. - FELLAY, J. - XENARIOS, I. - KAISER, L. - LE MERCIER, P. Virosaurus A Reference to Explore and Capture Virus Genetic Diversity. In VIRUSES-BASEL. NOV 2020, vol. 12, no. 11, 1248. NAMBOU, K. - ANAKPA, M. Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19. In INFECTION GENETICS AND EVOLUTION. ISSN 1567-1348, NOV 2020, vol. 85, 104471. UGWU, C.C. - HAIR-BEJO, M. - NURULFIZA, M.I. - OMAR, A.R. - IDERIS, A. Propagation and Molecular Characterization of Fowl Adenovirus Serotype 8b Isolates in Chicken Embryo Liver Cells Adapted on Cytodex (TM) 1 Microcarrier Using Stirred Tank Bioreactor. In PROCESSES. SEP 2020, vol. 8, no. 9, 1065. DOS SANTOS, R.N. - CAMPOS, F.S. - FINOKETTI, F. - DOS SANTOS, A.C. - CAMPOS, A.A.S. - WAGNER, P.G.C. - ROEHE, P.M. - BATISTA, H.B.D.R. - FRANCO, A.C. Viral diversity in oral cavity fromSapajus nigritusby metagenomic analyses. In BRAZILIAN JOURNAL OF MICROBIOLOGY. ISSN 1517-8382, DEC 2020, vol. 51, no. 4, p. 1941-1951. BANERJEE, A. - SANTRA, D. - MAITI, S. Energetics and IC50 based epitope screening in SARS CoV-2 (COVID 19) spike protein by immunoinformatic analysis implicating for a suitable vaccine development. In JOURNAL OF TRANSLATIONAL MEDICINE. JUL 10 2020, vol. 18, no. 1, 281. BOST, P. - GILADI, A. - LIU, Y. - BENDJELAL, Y. - XU, G. - DAVID, E. - BLECHER-GONEN, R. - COHEN, M. - MEDAGLIA, C. - LI, H.J. - DECZKOWSKA, A. - ZHANG, S.Y. - SCHWIKOWSKI, B. - ZHANG, Z. - AMIT, I. Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients. In CELL. ISSN 0092-8674, JUN 25 2020, vol. 181, no. 7, p. 1475-+. KISELEV, D. - MATSVAY, A. - ABRAMOV, I. - DEDKOV, V. - SHIPULIN, G. - KHAFIZOV, K. Current Trends in Diagnostics of Viral Infections of Unknown Etiology. In VIRUSES-BASEL. FEB 2020, vol. 12, no. 2, 211. KHAFIZOV, K.F. - SPERANSKAYA, A.S. - MATSVAY, A.D. - SHIPULIN, G.A. - DEDKOV, V.G. ADVANCED TECHNOLOGIES IN DIAGNOSTICS OF VIRAL DISEASES OF UNKNOWN ETIOLOGY. In INFEKTSIYA I IMMUNITET. ISSN 2220-7619, JAN-MAR 2020, vol. 10, no. 1, p. 9-25. MADRONERO, L.J. - CORREDOR-ROZO, Z.L. - ESCOBAR-PEREZ, J. - VELANDIA-ROMERO, M.L. NEXT GENERATION SEQUENCING AND PROTEOMICS IN PLANT VIROLOGY: HOW IS COLOMBIA DOING?. In ACTA BIOLOGICA COLOMBIANA. ISSN 1900-1649, SEP-DEC 2019, vol. 24, no. 3, p. 423-438. VLADIMIROVA, Mariia - AFONIN, Alexey - MUNTYAN, Virtoria - SIMAROV, Boris - ROUMIANTSEVA, Marina. Evaluation of Sinorhizobium meliloti Genomic Islands Inserted into the tRNA-Thr. In Proceedings 2020 Cognitive Sciences, Genomics and Bioinformatics, CSGB 2020, 2020-07-01, pp. 118-121. Dostupné na: https://doi.org/10.1109/CSGB51356.2020.9214720. ZHANG, Yuqing - CAO, Jiabao - ZHAO, Na - WANG, Jun. Virome: the next hotspot in microbiome research. In Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology, 2020-12-25, 36, 12, pp. 2566-2581. ISSN 10003061. Dostupné na: https://doi.org/10.13345/j.cjb.200372. BERNASCONI, Anna - CANAKOGLU, Arif - PINOLI, Pietro - CERI, Stefano. Empowering Virus Sequence Research Through Conceptual Modeling. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 2020-01-01, 12400 LNCS, pp. 388-402. ISSN 03029743. Dostupné na: https://doi.org/10.1007/978-3-030-62522-1_29. GARCIA-BONILLA, E. - CHAVES-MORENO, D. - RIANO-PACHON, D. - TERAN, W. - ACOSTA, A. - JUNCA, H. The Hologenome of Haliclona fulva (Porifera, Demospongiae) Reveals an Abundant and Diverse Viral Community. In FRONTIERS IN MARINE SCIENCE. NOV 2 2021, vol. 8. YANG, A.C. - KERN, F. - LOSADA, P.M. - AGAM, M.R. - MAAT, C.A. - SCHMARTZ, G.P. - FEHLMANN, T. - STEIN, J.A. - SCHAUM, N. - LEE, D.P. - CALCUTTAWALA, K. - VEST, R.T. - BERDNIK, D. - LU, N.N. - HAHN, O. - GATE, D. - MCNERNEY, M.W. - CHANNAPPA, D. - COBOS, I. - LUDWIG, N. - SCHULZ-SCHAEFFER, W.J. - KELLER, A. - WYSS-CORAY, T. Dysregulation of brain and choroid plexus cell types in severe COVID-19. In NATURE. ISSN 0028-0836, JUL 22 2021, vol. 595, no. 7868, p. 565-+. GIRGIS, H.Z. - JAMES, B.T. - LUCZAK, B.B. Identity: rapid alignment-free prediction of sequence alignment identity scores using self-supervised general linear models. In NAR GENOMICS AND BIOINFORMATICS. MAR 2021, vol. 3, no. 1. LI, N. - CAI, Q.Q. - MIAO, Q. - SONG, Z.S. - FANG, Y. - HU, B.J. High-Throughput Metagenomics for Identification of Pathogens in the Clinical Settings. In SMALL METHODS. ISSN 2366-9608, JAN 2021, vol. 5, no. 1. DASARI, C.M. - BHUKYA, R. MapReduce paradigm: DNA sequence clustering based on repeats as features. In EXPERT SYSTEMS. ISSN 0266-4720, JAN 2022, vol. 39, no. 1. Dostupné na: https://doi.org/10.1111/exsy.12827. GARCIA-FLORES, V. - ROMERO, R. - XU, Y. - THEIS, K. - ARENAS-HERNANDEZ, M. - MILLER, D. - PEYVANDIPOUR, A. - GALAZ, J. - LEVENSON, D. - BHATTI, G. - GERSHATER, M. - PUSOD, E. - KRACHT, D. - FLOROVA, V. - LENG, Y.Z. - TAO, L. - FAUCETT, M. - PARA, R. - HSU, C.D. - ZHANG, G. - TARCA, A. - PIQUE-REGI, R. - GOMEZ-LOPEZ, N. Maternal-fetal immune responses in pregnant women infected with SARS-CoV-2. In NATURE COMMUNICATIONS. JAN 18 2022, vol. 13, no. 1. Dostupné na: https://doi.org/10.1038/s41467-021-27745-z. CHIU, J.K.H. - ONG, R.T.H. Clustering biological sequences with dynamic sequence similarity threshold. In BMC BIOINFORMATICS. ISSN 1471-2105, MAR 30 2022, vol. 23, no. 1. Dostupné na: https://doi.org/10.1186/s12859-022-04643-9. POURHASANZADE, F. - IYER, S. - TJENDRA, J. - LANDOR, L. - VåGE, S. Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence. In PLOS COMPUTATIONAL BIOLOGY. ISSN 1553-734X, JUN 2022, vol. 18, no. 6. Dostupné na: https://doi.org/10.1371/journal.pcbi.1010228. GIRGIS, H.Z. MeShClust v3.0: high-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores. In BMC GENOMICS. ISSN 1471-2164, JUN 6 2022, vol. 23, no. 1. Dostupné na: https://doi.org/10.1186/s12864-022-08619-0. PRIVITERA, G.F. - ALAIMO, S. - FERRO, A. - PULVIRENTI, A. Virus finding tools: current solutions and limitations. In BRIEFINGS IN BIOINFORMATICS. ISSN 1467-5463, JUL 18 2022, vol. 23, no. 4. Dostupné na: https://doi.org/10.1093/bib/bbac235. KUMAR, S. - KUMAR, G.S. - MAITRA, S.S. - MALY, P. - BHARADWAJ, S. - SHARMA, P. - DWIVEDI, V.D. Viral informatics: bioinformatics-based solution for managing viral infections. In BRIEFINGS IN BIOINFORMATICS. ISSN 1467-5463, SEP 20 2022, vol. 23, no. 5. Dostupné na: https://doi.org/10.1093/bib/bbac326. WANG, C.C. - HUYAN, T. - ZHOU, X.J. - ZHANG, X.S. - DUAN, S.Y. - GAO, S. - JIANG, S.F. - LI, Q. Development of Single-Cell Transcriptomics and Its Application in COVID-19. In VIRUSES-BASEL. OCT 2022, vol. 14, no. 10. Dostupné na: https://doi.org/10.3390/v14102271. ZHANG, Qi Ya - KE, Fei - GUI, Lang - ZHAO, Zhe. Recent insights into aquatic viruses: Emerging and reemerging pathogens, molecular features, biological effects, and novel investigative approaches. In Water Biology and Security, 2022-11-01, 1, 4, pp. Dostupné na: https://doi.org/10.1016/j.watbs.2022.100062. OBEREMOK, V. V. - ANDREEVA, O. A. - LAIKOVA, K. V. - NOVIKOV, I. A. - KUBYSHKIN, A. V. Post-genomic platform for development of oligonucleotide vaccines against RNA viruses: diamond cuts diamond. In Inflammation Research, 2022-08-01, 71, 7-8, pp. 729-739. ISSN 10233830. Dostupné na: https://doi.org/10.1007/s00011-022-01582-2. Kategória ADMA - Vedecké práce v zahraničných impaktovaných časopisoch registrovaných vo WOS Core Collection alebo SCOPUS Kategória (od 2022) V3 - Vedecký výstup publikačnej činnosti z časopisu Typ výstupu článok Rok vykazovania 2016 Registrované v WOS Registrované v SCOPUS DOI 10.1093/database/baw162 
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Názov súboru Prístup Veľkosť Stiahnuté Typ Licence viruSITE_integrated database for viral genomics.pdf Neprístupný/archív 460.3 KB 0 Vydavateľská verzia rok CC IF IF Q (best) JCR Av Jour IF Perc SJR SJR Q (best) CiteScore N rok vydania rok metriky IF IF Q (best) SJR SJR Q (best) 2016 2015 2.627 Q1 1.491 Q1
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